RNA id: TU1612150



Basic Information


Item Value
RNA id TU1612150
length 494
lncRNA type intronic
GC content 0.53
exon number 2
gene id G1410861
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76820101 ~ 76861888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aatgatgagagagaccagggagtcgttggaccaggggtaatgagagagagagtccagggagtcattgtaccaggggtaatgagagagagaccagggagtcgttgtaccagggttaatgatgagagagaccaggggtaatgggacagagaccagggagccattggaccaggggtaataatgagagagaccagggGTAATGATGAGAGACACCAGGGAGCCGTTgttccaggggtaatgatgagagagaccaggggtaatgatgagagagaccatggAGCCGTTGTTCCATGGGTAATGATgacagagaccaggggtaatggtgAGAGAAACCAGGGAGCCATTGtcccaggggtaatgatgagagagaccagggatcCGTTGTTCcaagggtaatgatgagagagaccaggggtaatgatgagagagaccaggggtaatgatgagagagaccagggagccgttgTTCCAGGggcaatgatgagagagaccagggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1612023 lncRNA downstream 24221 76795645 ~ 76795880 (-) False G1410776
TU1612022 lncRNA downstream 24221 76795677 ~ 76795880 (-) False G1410776
TU1612015 lncRNA downstream 24650 76779518 ~ 76795451 (-) True G1410771
TU1612012 lncRNA downstream 39337 76779518 ~ 76780764 (-) False G1410771
TU1612002 lncRNA downstream 44560 76775289 ~ 76775541 (-) True G1410763
TU1612177 lncRNA upstream 30643 76892531 ~ 76893149 (-) True G1410887
TU1612178 lncRNA upstream 33803 76895691 ~ 76896898 (-) True G1410888
TU1612180 lncRNA upstream 38836 76900724 ~ 76911856 (-) True G1410890
TU1612181 lncRNA upstream 50666 76912554 ~ 76917720 (-) True G1410891
TU1612213 lncRNA upstream 95554 76957442 ~ 76964240 (-) True G1410912
XM_036947831.1 mRNA downstream 45337 76705789 ~ 76774764 (-) True LOC110514470
XM_036947829.1 mRNA downstream 63955 76705789 ~ 76756146 (-) False LOC110514470
XM_036947830.1 mRNA downstream 63955 76705789 ~ 76756146 (-) False LOC110514470
XM_036947832.1 mRNA downstream 63955 76705789 ~ 76756146 (-) False LOC110514470
XM_036947833.1 mRNA downstream 63956 76705789 ~ 76756145 (-) False LOC110514470
XM_021567163.2 mRNA upstream 240192 77102080 ~ 77104717 (-) False LOC110492706
XM_036945807.1 mRNA upstream 276801 77138689 ~ 77144798 (-) True LOC110491186
XM_036947837.1 mRNA upstream 631972 77493860 ~ 77577462 (-) False ikbkg
XM_036947839.1 mRNA upstream 631972 77493860 ~ 77582329 (-) False ikbkg
XM_036947838.1 mRNA upstream 631973 77493861 ~ 77582658 (-) True ikbkg
TU1612028 other downstream 22990 76796366 ~ 76797111 (-) True G1410776
TU1612024 other downstream 24221 76795583 ~ 76795880 (-) False G1410776
TU1612017 other downstream 25048 76792420 ~ 76795053 (-) True G1410773
TU1611910 other downstream 174437 76642780 ~ 76645664 (-) True G1410701
TU1611897 other downstream 261927 76557040 ~ 76558174 (-) False G1410696
TU1612210 other upstream 99582 76961470 ~ 76972119 (-) True G1410911
TU1612655 other upstream 303570 77165458 ~ 77165823 (-) True G1411281
TU1612750 other upstream 487665 77349553 ~ 77351225 (-) True G1411366
TU1613409 other upstream 1188378 78050266 ~ 78053138 (-) True G1411862
TU1613387 other upstream 1195079 78056967 ~ 78067510 (-) False G1411845

Expression Profile