RNA id: TU1612310



Basic Information


Item Value
RNA id TU1612310
length 217
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1410999
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 77066601 ~ 77066817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTAAATGTTATCGCCAATTGATGAAGCAACTTCACTCAAAATGAACTGTGCACGCCTCCcgggtgcggctggcttccgggttggatgtgcgctgtgttaagaagcagtgcggcttggttgggttgtgtatcggaggacgcatgactttcaaccatcgtctctcccgagcccgtacgggagttgtagcgatgagacaacaacaacaattggatacca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1612309 lncRNA downstream 125 77066176 ~ 77066476 (-) True G1410998
TU1612306 lncRNA downstream 4689 77061615 ~ 77061912 (-) True G1410995
TU1612304 lncRNA downstream 6632 77059316 ~ 77059969 (-) True G1410993
TU1612300 lncRNA downstream 7753 77058155 ~ 77058848 (-) True G1410990
TU1612258 lncRNA downstream 56175 77009085 ~ 77010426 (-) True G1410949
TU1612323 lncRNA upstream 21328 77088145 ~ 77088347 (-) True G1411012
TU1612327 lncRNA upstream 23449 77090266 ~ 77090524 (-) True G1411015
TU1612590 lncRNA upstream 25986 77092803 ~ 77094275 (-) True G1411242
TU1612599 lncRNA upstream 35534 77102351 ~ 77102756 (-) True LOC110492706
TU1612617 lncRNA upstream 53670 77120487 ~ 77496723 (-) True G1411261
XM_036947835.1 mRNA downstream 69581 76807151 ~ 76997020 (-) True LOC118939598
XM_036947831.1 mRNA downstream 291837 76705789 ~ 76774764 (-) True LOC110514470
XM_036947829.1 mRNA downstream 310455 76705789 ~ 76756146 (-) False LOC110514470
XM_021567163.2 mRNA upstream 35263 77102080 ~ 77104717 (-) False LOC110492706
XM_036945807.1 mRNA upstream 71872 77138689 ~ 77144798 (-) True LOC110491186
XM_036947837.1 mRNA upstream 427043 77493860 ~ 77577462 (-) False ikbkg
XM_036947839.1 mRNA upstream 427043 77493860 ~ 77582329 (-) False ikbkg
XM_036947838.1 mRNA upstream 427044 77493861 ~ 77582658 (-) True ikbkg
TU1612210 other downstream 94482 76961470 ~ 76972119 (-) True G1410911
TU1612028 other downstream 269490 76796366 ~ 76797111 (-) True G1410776
TU1612024 other downstream 270721 76795583 ~ 76795880 (-) False G1410776
TU1612017 other downstream 271548 76792420 ~ 76795053 (-) True G1410773
TU1611910 other downstream 420937 76642780 ~ 76645664 (-) True G1410701
TU1612655 other upstream 98641 77165458 ~ 77165823 (-) True G1411281
TU1612750 other upstream 282736 77349553 ~ 77351225 (-) True G1411366
TU1613409 other upstream 983449 78050266 ~ 78053138 (-) True G1411862
TU1613387 other upstream 990150 78056967 ~ 78067510 (-) False G1411845
TU1613384 other upstream 999220 78066037 ~ 78067510 (-) False G1411845

Expression Profile