RNA id: TU1612858


Basic Information

Item Value
RNA id TU1612858
length 470
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G1411449
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 77607265 ~ 77609322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagacctcacagtgaaatgctgaatacaacagtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgcttacttacaggcccttaaccaacaatgcagtattaagaaaaaagtaagagataagaataacaaataattaaagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612851 lncRNA downstream 12535 77594399 ~ 77594730 (-) True G1411442
TU1612847 lncRNA downstream 32866 77571944 ~ 77574399 (-) True G1411438
TU1612839 lncRNA downstream 61340 77537669 ~ 77545925 (-) False G1411433
TU1612840 lncRNA downstream 63838 77537669 ~ 77543427 (-) True G1411433
TU1612612 lncRNA downstream 113530 77492688 ~ 77493735 (-) False G1411259
TU1612864 lncRNA upstream 1520 77610766 ~ 77611074 (-) True G1411453
TU1612887 lncRNA upstream 1957 77611203 ~ 77611564 (-) True G1411474
TU1612913 lncRNA upstream 38823 77648069 ~ 77653082 (-) True G1411498
TU1613241 lncRNA upstream 119244 77728490 ~ 77729372 (-) True G1411740
TU1613249 lncRNA upstream 146130 77755376 ~ 77755913 (-) True G1411748
XM_036947838.1 mRNA downstream 24607 77493861 ~ 77582658 (-) True ikbkg
XM_036947839.1 mRNA downstream 24936 77493860 ~ 77582329 (-) False ikbkg
XM_036947837.1 mRNA downstream 29803 77493860 ~ 77577462 (-) False ikbkg
XM_036945807.1 mRNA downstream 462467 77138689 ~ 77144798 (-) True LOC110491186
XM_021567163.2 mRNA downstream 502548 77102080 ~ 77104717 (-) False LOC110492706
XM_036947852.1 mRNA upstream 346353 77955599 ~ 78024975 (-) False flna
XM_036947847.1 mRNA upstream 346353 77955599 ~ 78024977 (-) False flna
XM_036947849.1 mRNA upstream 346353 77955599 ~ 78024977 (-) False flna
XM_036947850.1 mRNA upstream 346353 77955599 ~ 78024977 (-) False flna
XM_036947851.1 mRNA upstream 347392 77956638 ~ 78024979 (-) True flna
TU1612750 other downstream 256040 77349553 ~ 77351225 (-) True G1411366
TU1612655 other downstream 441442 77165458 ~ 77165823 (-) True G1411281
TU1612210 other downstream 635146 76961470 ~ 76972119 (-) True G1410911
TU1612028 other downstream 810154 76796366 ~ 76797111 (-) True G1410776
TU1612024 other downstream 811385 76795583 ~ 76795880 (-) False G1410776
TU1613409 other upstream 441020 78050266 ~ 78053138 (-) True G1411862
TU1613387 other upstream 447721 78056967 ~ 78067510 (-) False G1411845
TU1613384 other upstream 456791 78066037 ~ 78067510 (-) False G1411845
TU1613385 other upstream 456791 78066037 ~ 78067510 (-) False G1411845
TU1613386 other upstream 457116 78066362 ~ 78067510 (-) False G1411845

Expression Profile