RNA id: TU1613386



Basic Information


Item Value
RNA id TU1613386
length 1030
RNA type TUCP
GC content 0.45
exon number 2
gene id G1411845
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78056967 ~ 78067510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGTCCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatctgagggagggagaggtgagtgaTCAGAGGTCCTCTACAGACAGCAATGTTTCTCAGTGTAAAGGAACGTGGCCCTTAAGACGTGTAAAACCCCATAGCCGGAAATCTAATTTGCATAATAAAACGATCCATAAAAATCTGCCAGGAAGCTAGAGATCTGTTCCCATTGGCCGAGTCTCGATCCACCACTTCCGCctctgcagtgaaaggtggcatagctagagcagtgtttggtcagaccatgagacatccttgAAAATCAGTCTCAAACAAAACATCTAACGTATGAACGGTTTggctacaaactattatgacctggATGGAAAGGAGACTcaaacacaatggtgttctccgtttacGCTAAAACATCAAGTGTCTTGGACTCCTCCAAAGTCATTACAGTTGATCTGACAACTTCTATTGagtccaaacagtttgggctacactaTTAAGACCCCTCTGGAAAGGTCTCAATGTTGGTTGTTTAGCATTATGACACCTCCAGGCTGCAAGGCTCACCTGAAGTCTGGAACCAAGCAACATTTTTTGGGAAGTATAGGTGaagactgtttagtgccaaaaataaggggttaaatgtgttgtttttaaaTCCGATCTTCcgtctctcagatataggacagacatttCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1613397 lncRNA downstream 1079 78064518 ~ 78065283 (-) True G1411850
TU1613408 lncRNA downstream 20718 78045314 ~ 78045644 (-) True G1411861
TU1613351 lncRNA downstream 113857 77951227 ~ 77952505 (-) True G1411819
TU1613344 lncRNA downstream 116696 77949451 ~ 77949666 (-) True G1411817
TU1613340 lncRNA downstream 119853 77945584 ~ 77946509 (-) True G1411813
TU1613414 lncRNA upstream 58 78067568 ~ 78067842 (-) True G1411867
TU1613426 lncRNA upstream 49236 78116746 ~ 78120205 (-) False G1411876
TU1613427 lncRNA upstream 49236 78116746 ~ 78118921 (-) True G1411876
TU1613447 lncRNA upstream 79809 78147319 ~ 78147782 (-) True G1411896
TU1613458 lncRNA upstream 100967 78168477 ~ 78172534 (-) True G1411906
XM_036945860.1 mRNA downstream 36418 78028207 ~ 78029944 (-) True LOC118939482
XM_036947851.1 mRNA downstream 41383 77956638 ~ 78024979 (-) True flna
XM_036947847.1 mRNA downstream 41385 77955599 ~ 78024977 (-) False flna
XM_036947855.1 mRNA upstream 4109 78071619 ~ 78096291 (-) False dnase1l1
XM_036947856.1 mRNA upstream 4109 78071619 ~ 78096332 (-) False dnase1l1
XM_036947854.1 mRNA upstream 4109 78071619 ~ 78096348 (-) False dnase1l1
XM_036947853.1 mRNA upstream 4109 78071619 ~ 78096380 (-) True dnase1l1
XM_036947860.1 mRNA upstream 37070 78104580 ~ 78137424 (-) True LOC110512774
TU1613409 other downstream 13224 78050266 ~ 78053138 (-) True G1411862
TU1612750 other downstream 715137 77349553 ~ 77351225 (-) True G1411366
TU1612655 other downstream 900539 77165458 ~ 77165823 (-) True G1411281
TU1612210 other downstream 1094243 76961470 ~ 76972119 (-) True G1410911
TU1612028 other downstream 1269251 76796366 ~ 76797111 (-) True G1410776
TU1613704 other upstream 248807 78316317 ~ 78318998 (-) False G1412091
TU1613705 other upstream 248807 78316317 ~ 78318998 (-) True G1412091
TU1613851 other upstream 436781 78504291 ~ 78511632 (-) False G1412203

Expression Profile