RNA id: TU1613397


Basic Information

Item Value
RNA id TU1613397
length 458
lncRNA type read_through
GC content 0.49
exon number 3
gene id G1411850
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78064518 ~ 78065283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATACACAACCACAGAGTTACTGTCTGCAGCCATTGCACACCAGAACCGCACGTCAGCGGGACTGGTCGGCTTAATAAGCTGCAGGTGTGTTTTATGAGTTTAGAACAGTGCTGTACCTGTCAGCCCCAGCGCAGGACAACATCTTGTTGATACGGATGACATGGAAGGGGTGCAGGCGGACCCGGATGTGGAAGCCGTCCTTTCCACAGGTCTTCACCATGTACTTGTTGGCACAGATACGGGCTGCCTCCAGAGCAGAGGACAGCTGCTCGTACTCGTCAGAGACCATGTGACCACACAGAGGGAACTCGTCCACCCTGGCCTTCTTCCTGCCCAGGTCAAAGATCCTAATCTTAGGATCTAGAGGTAAATAACAAGAGAGAGTTTACAAGAGGTAATTGTTCATGTTGGTCTGAAtgtcgtaaaaaaaaaaaaaaagtacacttTGCAGAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613408 lncRNA downstream 18874 78045314 ~ 78045644 (-) True G1411861
TU1613351 lncRNA downstream 112013 77951227 ~ 77952505 (-) True G1411819
TU1613344 lncRNA downstream 114852 77949451 ~ 77949666 (-) True G1411817
TU1613340 lncRNA downstream 118009 77945584 ~ 77946509 (-) True G1411813
TU1613336 lncRNA downstream 119585 77944245 ~ 77944933 (-) True G1411812
TU1613388 lncRNA upstream 754 78066037 ~ 78067510 (-) False G1411845
TU1613414 lncRNA upstream 2285 78067568 ~ 78067842 (-) True G1411867
TU1613426 lncRNA upstream 51463 78116746 ~ 78120205 (-) False G1411876
TU1613427 lncRNA upstream 51463 78116746 ~ 78118921 (-) True G1411876
TU1613447 lncRNA upstream 82036 78147319 ~ 78147782 (-) True G1411896
XM_036945860.1 mRNA downstream 34574 78028207 ~ 78029944 (-) True LOC118939482
XM_036947851.1 mRNA downstream 39539 77956638 ~ 78024979 (-) True flna
XM_036947847.1 mRNA downstream 39541 77955599 ~ 78024977 (-) False flna
XM_036947855.1 mRNA upstream 6336 78071619 ~ 78096291 (-) False dnase1l1
XM_036947856.1 mRNA upstream 6336 78071619 ~ 78096332 (-) False dnase1l1
XM_036947854.1 mRNA upstream 6336 78071619 ~ 78096348 (-) False dnase1l1
XM_036947853.1 mRNA upstream 6336 78071619 ~ 78096380 (-) True dnase1l1
XM_036947860.1 mRNA upstream 39297 78104580 ~ 78137424 (-) True LOC110512774
TU1613409 other downstream 11380 78050266 ~ 78053138 (-) True G1411862
TU1612750 other downstream 713293 77349553 ~ 77351225 (-) True G1411366
TU1612655 other downstream 898695 77165458 ~ 77165823 (-) True G1411281
TU1612210 other downstream 1092399 76961470 ~ 76972119 (-) True G1410911
TU1612028 other downstream 1267407 76796366 ~ 76797111 (-) True G1410776
TU1613384 other upstream 754 78066037 ~ 78067510 (-) False G1411845
TU1613385 other upstream 754 78066037 ~ 78067510 (-) False G1411845
TU1613386 other upstream 1079 78066362 ~ 78067510 (-) False G1411845
TU1613383 other upstream 1649 78066932 ~ 78067510 (-) True G1411845
TU1613704 other upstream 251034 78316317 ~ 78318998 (-) False G1412091

Expression Profile