RNA id: TU1613704


Basic Information

Item Value
RNA id TU1613704
length 2511
RNA type TUCP
GC content 0.41
exon number 2
gene id G1412091
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78316317 ~ 78318998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggctatgtgcctggcctaatacattatcacagcatattggctatgtgcctggtctaatacattatcacagcatattggctatgtgcctggcctgccaatattgttGTTCGACCATATTATTTTAAATATCGAGCcttgataacaaaatagatcagttggtgtaGCACTTGCAAGGCACTGTGGAGCATTAATTAAAATAAttagcttttttattttactgcacTGATGTTACCTGCATCTTATGGTCATGGTGCTTTCAATACAACTGGGAATTTGAGAAAAATAAAACTAGGTCAAAAATATgaagtcagtgatcttcaggttggaaaggCGGAcctctagaaagatgccagagtttccgactgggaattccgagttggatgtcCTTCAAAACAAATTTTCCCAGTCGGATCTAAAAAAAGAACattcagagttcccagttttcTTCAACACACTGAAGTCGGAAGGCAgagatttccaagttcccagttgttttgaacactgcATTAGTCtcaatggagggagagaaagagcagcaGAGGGTTCACCTCTCACGGTCCCTGTTCTCTCCTTTTCCTCccgtgagactgaccagagagaggggacaccgtcttccacctggTGGCCAAACTTGAGTCGCACcgcatctgcctcatgcacaaattcatgttgttcctgtgaccagagaaagtgaaatattccttgatattaaaataGACACGACAAGTTGCTAATAATGATAAAACGCAGGGCTATCGCTGcacttggctactcattcattgcagctacAGCGTGAGCGGAAGTATGGAGAAGCGCGTTTTATGTTTTGTATTAGTGTtgaataaacacagttgacagtgctgaatacGGCGGAGTTGATCTTTTCagacaaataaaatgtttcaaAATGGGAGCACTTTGCCTAGCCGGTgtgcagggcttctgaatcaatgCACCTACTAACAACCGTGTAACATGAATAAAAAAGGAGAGCGAGCCTTTatcgttggcttttctacagacatgtTTGATGATTGACTAAGAATACCTTGAAGATCGACCAGTCAGCGACTGTGCTTTAGAATATTCAGAAGGCTGGGGTAGTACCGTCTGTAACCAGGGGAGGGCGGTAGAATATTTAGAACATTCAGAAGGCTGTGGTAGTACCGGCTGTCACCAGGAGAGGGCAGTAGAGCCTTTAGGACATTAGAACCTTCTCTCTGGGTTAGGTTGCCCAGGGGACAAAGATTTATCCTCAATAATTTTTCAACCTTTCAGATTTGTCATTTAACTCCATCGATCAGCACCCCACATTGAAATGTTTTTAGAAACAGAATTAAATCATGTTTGTAACACTTGATTACTTTAGCATTTCTTGTTCTCAGTCTTCCATGATATTGTGATGCAGCCTTTCTTTACTGTGTGTGATGTCATGTTTTAAAGGAAGTGTTTCATCATGTTTTTCCTATTTGATGGATGGTAATGAAGGAACAGTGTTGCTGCTTCAGTTGTATTATGCAATAGCTAGTTATTATCTGGTGCTTAATGAGGGATTTGGGCCCTGTTTAGATCCACTCAAACACTGCCTTTCCGCCTCCCCTCCTTTCTGTCATTTTGTGAGGAAGGATGAGGTACATATTTGAACTGAAGGAATATAAAGCTACTGTGGCTTGTGATGTCTTGAGGTGAACCCTGGTTGTAAAAAGACACCTGGAAGGTTGACAGGATTTAACATTTAATAAGTCATACTCTTCCAGCAGTGTGGAGGAGTTTTGGTTCTTGTGATCAATGTTCCCTTAAAATAATTTAGGcgctgagcaaatttcaggtctgcttaGCACAAACTTGTTGAATGTTGTGAAGGTTCTGTGCAACTTCCGGCGCGTTTACTGAGGCTGTACCGGCTTTACAGTTACATTTTCAgacagtggtcaagtaggctactgtggctatgtgatcataatgtaggcctaccagagtggcctaccatcaaaacaatggagaaaatgcatcccataacatttgaacatggaaatagctgttgtATCATTCAGCccacagtagcagccaatgtgtggtttGTGTAGAGGACGAGTCATAGTTCCTATTCTGGTGGGTTCTGCCTAAAACacaatctcttgcatagttttgcatactaagtcttgcatagttcattttgtttcggtatgttacaTGGAAAGCGGTTAATATTTCATTGATTCTCtgacaattcccacagtaaagggaaacattgAGAGTGAATTACAGGgagaaaactctagaaagttgagtgaagttaaATCTCGTGCTTCatcttagagggaacattgcttgtGATTTATAGTTGAATGTCTCCGCAGCACAAGCCAGCAGGTTGACCTCTAGAGTTCGGAGAACAGTAGAAAACATATGACATTTCACTGGAAAGAAAACATGACTGTGTAAAAATAACAAACAATGCAGTGTTACTTTTTATGGGGAGGAAATGAATAAACCATTTAAAACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613731 lncRNA downstream 42240 78273455 ~ 78274077 (-) True G1412115
TU1613726 lncRNA downstream 51912 78263982 ~ 78264405 (-) True G1412110
TU1613716 lncRNA downstream 68919 78246162 ~ 78247398 (-) True G1412102
TU1613404 lncRNA downstream 120680 78194864 ~ 78195637 (-) True G1411857
TU1613462 lncRNA downstream 137049 78178805 ~ 78179268 (-) True G1411909
TU1613770 lncRNA upstream 38405 78357403 ~ 78361301 (-) True G1412145
TU1613771 lncRNA upstream 39502 78358500 ~ 78358901 (-) True G1412146
TU1613808 lncRNA upstream 133345 78452343 ~ 78453268 (-) True G1412169
TU1613811 lncRNA upstream 134474 78453472 ~ 78454261 (-) True fkbpl
TU1613833 lncRNA upstream 137446 78456444 ~ 78456887 (-) True G1412193
XM_036947862.1 mRNA downstream 1369 78206139 ~ 78314948 (-) True LOC110492720
XR_002469070.2 mRNA downstream 112549 78201885 ~ 78203768 (-) True LOC110492727
XM_021567185.2 mRNA downstream 122650 78167965 ~ 78193667 (-) True ndnl2
XM_036947860.1 mRNA downstream 178893 78104580 ~ 78137424 (-) True LOC110512774
XM_036947853.1 mRNA downstream 219937 78071619 ~ 78096380 (-) True dnase1l1
XM_036947863.1 mRNA upstream 5079 78324077 ~ 78381586 (-) True LOC110492722
XM_021567181.2 mRNA upstream 85172 78404170 ~ 78414670 (-) True ccdc115
trnae-uuc-7 mRNA upstream 99820 78418818 ~ 78418889 (-) True trnae-uuc-7
trnan-guu-13 mRNA upstream 102980 78421978 ~ 78422051 (-) True trnan-guu-13
XM_036947864.1 mRNA upstream 122633 78441631 ~ 78450333 (-) False fkbpl
TU1613387 other downstream 248807 78056967 ~ 78067510 (-) False G1411845
TU1613384 other downstream 248807 78066037 ~ 78067510 (-) False G1411845
TU1613385 other downstream 248807 78066037 ~ 78067510 (-) False G1411845
TU1613386 other downstream 248807 78066362 ~ 78067510 (-) False G1411845
TU1613383 other downstream 248807 78066932 ~ 78067510 (-) True G1411845
TU1613851 other upstream 185293 78504291 ~ 78511632 (-) False G1412203

Expression Profile

TU1613704 Expression in all Baseline Samples

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TU1613704 Expression in each Bioproject

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TU1613704 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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