RNA id: TU1613810


Basic Information

Item Value
RNA id TU1613810
length 8514
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1412171
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78490128 ~ 78498774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTATTTTTAGATACTAGTAGTGCTACGCTCTCTTTCATAAGCCCCTCCTACATGACTTCTGACCTGGCTCCCCAttggtctcctcttcctcctctatggctggctcttcttcttcctctaggACACATAAAGTGAGAGAGTGATAGACAGGCAGAAAAGCCTATCTCGTCCCCTTCTCCATAAGGTGTGCACTTGTTTACTTCAAGACATTGGATTGGTGTAAAGTTATGGCGGAAAATACGTCTTCACCAATCCAAAGCTTTTAAATCCTTGAGTAGGAGTGAACGAGTGCACACTTGTAGGGAGAATGGGATAAGAAGAGCATCAGAATCAGTAGAAAAGTAGAACTGATCTCATTTGAAACCATATTGTCCATACCCCTTTCCTGCAGTTGAATGACCAGAtcggcctcatgggtggaatgttaataatattaataatttcATAATTATCTGAAATTCCGGTGTTtaatgtcaaacggttttgttgtatttcagtcttctgtgatgtatatcaaGTGTAATACTGGGATGCAAACTCCAAATTGATTATATTTAAACTCTATGTCTGACATGGTATggatgtcttctttttttaagctcaaaaccatgtgtgtgaggtgtatccTTTCTTTCAAAGAAGATGTGTTTAAGAGAACCAAGAAACCCCCTGTGTGCTCCTGATTGAGCCCACTGCAACCAACATTTACAAATAGctctaccatgacctgttctgTCAAGTTCTATCATTTTCGACAAATTTCAGTTCATGtgacaaaacaataaatgttttttttggtaAAGAATCACAACCTTAACCTTGCATTACATCTtgcattcaaaatggattaaacagaccctctcacccatctacacacaacaccccataatgacaaagtgaaaatatgttttttgcaTTTTTTTGAAAATGCCatagagtcaatactttgtagaaggacctttggcagcgattacagcagtgaatctttctgggtaagtctttaaaaGCTTGCTAcaactggattgtgcaacatttgccaaaTATTCTCTGTCAAATTCAAGATGGCGCCGACGGAGATGGTCGCCTCActtcgagtccttaggaaactgcagtatttttattttttattttttatttcttacattgtatTGTTACCcgaggaaatcttaagtcttgttacatacagtcgggaagaactattggatataagagtgacgtcaacttaccaacattacgaccaggtatatgactttcccgaagctgATCTTTTGTTCGGACCACCCCCCAGGAcattggatctaatcccagaacCCAAAAGAACGTTGCCGCAGAAGAGGTAGACAAAGCTGCCTCTGGTCAGACTTTCGAAGGCGTGCACACCTCATGCTTCAGAGCATATAATTCGCCAATGTCCAGTGTCTAGTCAACAAGGTGGATGAAATTAGGGCAAGGGTTACATCAGAGAATGTAAaattctctgtttcacagaaacatggctctctcgtgatatgttgtcggaatcggtACAGCCACCGGGTTTCTTCATGCGTCGCGAAACAAACATCTCTATGGTAAGAAGAAGagcgggggtgtatgcttcatgattaacgactcatggtgtaatcattaCAACATACAGGAAAtcaagtcattttgttcacctgacatagaattccttacaatcaaatgccgaccacattatctcccaagagaattctcttcgattattaTCACAGCCAGGTACGGGGCGGCAgttagcctagaggttagagcgttggactagtagccgaaaggttgcaagatcgaatccctgagatgaatccctgagctgttgtTTTGCagctgaaaaaggcagttaacccactgttcctaggccgtcattgacaatGAGCATTTGTTCTGAACTACCTTGACTagttaaaaaagaaaaaaatgtccctcaaggaacttcactggactatgcaaactggaatccatatatgcTGAGACTGCATTAACTGTAGCTGGggaattttaacaaagcaaatttgagagcaaggctacctaaattctaccaacacattgactgCAGTACCAGCGCTGGCAATACACTGGACCACtactactctaacttccgcgatgccctccctttggcaaatccgaccacgactcCATCTCAAATCAACTTGTATAAGTCACATGCGCAAAATAAAACAgtgaccttacaatgaaatgcttacttagaggaccgagcatgccccaacaatgcagttccaAAAAATACAGATCAGAATAAGAGATCAAAGTAAcgagtaattaaagagcagcagtgaaataacaatactatatacagggggtaccgatacagagtcaacgtgagggggcaccggttatttgagatagtatgtaaatgtaggtagagttattaaagtgactttgcatagatgacaacagagagtagcagtggtgtaaagagagggtgagggggggacacggcaaatagtctgggtagccatttgactagatgatcaggagtcttatggcttgggggtagaagctgtttagaagcttcttggacctagacttggcgctccggtaccgcttgttgtgtggtagcagagagaacactctatgactagggtggctggagtgttTGATAATTTTtacggccttcctctgacaatgcctggtatagaggtcctggatggcaggaggcttggccccggtgatgtaccgggccatttgcactaccctctgtagtgccttgcggtcggaggccaagcagttgccataccaggcagccaTACCAGGCAGCAACcagtcaggattctctcgatggtgcaactgtagaatcttttgaggatctgaggacacatgccaaatattttcagtctcctgagggagaacaGGTTTtctcatgccctcttcatgactgtcttggtgtgcttgcaccatgttagtttgttggtgatgtggacaccaaggtactttaagctctcaacctgctccactgaaGCCCCGTCGATGataatgggggtgtgctcggtcctctttttcctgtagtccacaatcatctcctttatcttgttcacgttgagggagaggttgttgtcctggcaccacaaggccaggtcactgacctcctccctataagctgtctcgtcattgtcggtgatcaggcctaccaccgttgtgtcatcggcaatcgcagtacacgtcctggtaatccgtctggccctgcgaccttgtgaatgttgatctttttaaaggtcttactcacatcggctgtggagagcgtgatcacacggtcttccggaacagctgatgctctcatgcttgtttcagtgttatttgcctcgaagcgagcatagaagtagtttggctcgtctggtaggctcgtgtcactgggcagctctccgctgtgcttccctttgtaatctgtaatggtttacaagccctgccacatccaacgagcatcagagccagtgtagtgcgattcaatcttagtcctgtattgatgctttgtctgtttgatggttcattggaGGGCATTGCAGGACTTCTTATAAGCTTCAGGTTTACagttccgctccttgaaagcagcagttctagcctttagctcagtgcggatgctgcctgtaatccatggcttctggttggggtatgtacgtacggtcactgtggggacgacgtcatcgatgcacttattgatgaagccaatgactgatgtagtgtactcttacatattccagtctgtgctagcaaaacagtcctgtagcttagcatctgcttcctctgaacacttttttattgatctagtcactggtgctttctTCTTAaatgtttgcttgtaagcaggaatcaggatagaattacggtcagatttgccaaatggagggcaagggagagctttgtatgcgtccgtgtgtgtggagtataggtggtccagagttatttttcctctggttgcacatttaacatgctgatagaaatttggtaaaacggatttaagtttccctgtattaaactccccggctactaggagcgccgcctctgggtgagcgttttcttgtttgcttatggcggaatacagctcattcaatgctgtcttagtgccagcctctgactgtggtggtatgtaaaacaGCTACAAAGAGTACAAattaaaactctcttggtaggtagtgtggtctacagcttatcatgagatactctacctcaggcaatcaatagcttgagacttccttagaaatcgtgcaccagctgttgtttacaaaaatacaaagaccgccgccccttgtcttaccagaggccactgttctatcctgccgatacatcATATAACcaaccagctgtatgttgatgttgtcgtcattcagccacgactccgtgaagcataagatgttacagtttttaatgtcccgttggtattTTAATCTTCCGTGTAACTTGTCaattattgtccaaagattgcacgtttgctagcagaatggagggaaTTGGGGGTTAAtttgatcgcctacgaattctcagaaggcagcccgacctgCGGCCACTCTTTCTCAGTCTCCTCTTCATGCAGATCACGGGGATCAGAGAAGCAGTGTATCCTTCGCGTCGGGCTTGTCAGAGTCGTCAGAGTCGTGAAGGAAAAagaggattctgctagtccgtggtgagtaatcacagtcctgatgtcttGAAGCTATTTTCGGTCTTAAAAGACGGTAGCgggaacattatgtacaaaataagtaaaaaaacaagttacaaacaatgcaaataaaCAAATGAAAAACACAATCGGctgggggcacgtaaaacgtctACCATCTAATTCCGGCTCCATTTTACAcatcttgctcctaccgtcctataggcagaaactcaaacaggatgtacctgtgaCTAgaactattcaatgctggtctgaccaattggataATACATTGCCGCTGATGCAGCCCGCTTCCAAGGACTGCGGGCTGCCCCTCTCCTTCTTCGTGGCCGACGtgaacgtgttaaccctcgtaaggctgctggcccagacggcatccctaaccCCGTCCACAGAGCAtgctcagaccagctggctggtgtatttacggacatattcaagtCTGCTGTCTAAATAACTAAAAGACTTCTCagctttttattttcaatacatttttaaagtattgagtgtagatcagtgacaaaaCATCTACGTTTAGGGGgactgaatagtttctgaaggcactgtatttccaatAACCACagatgtttgaagctggtgtacaaaacagaAAGTTCACAGACGCCAGAGCCAAATTTAAGGGCAGGAAGCATAAAAAGAGAGCTCATGGAACTGATAGACTTCAATGAGaacctaaaaaaatatatatatgtgagagagctggagagacagacatgACAGAAGGAGGTGGCtgagctggagagacagacatgACAGTGGTGGCTGAGTTGAAGAGTCAGCACCGACTGATAATTATTAGTTGACAGAAGCTCCACCCCAGTACATCTTCGagcattcatgtgtgtgtgtgttgggagtggggggggggggggggttaaggtaGCAACATAGataagcagcagcaggagcactaccttcttcctctccctcatcctcctcatcctcttctccttcctccttctcctctcaagAGTTATGTTAGTGTATCAGCTAAACAGCAGTACAGAAGCCAGTGCCACAcacacagttgcaaatgagaacgtgttctcaactaaactacctggttaaataaaataaataaataaaacacacacacacacaaaaacagtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtatatgtgtgtgtatatatgtgtttgtgtgtgtttatatgtgtttgtgtgtgtttatatgtgtttgtgtgtgtgtgtgtgtatctgcgtttgtgtctatctgtctgtgtgtgtgtgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgttggaTATCAGAGCGTCATCAATTTatcagcactacgaccaggaatatgactttcccgaagtggatcctTTGTTCAAACCATGCAATTCGAATTAATCAGCTGTGTTCGCTAGGAGAAAAGTGTAACACCAACCAGGCCctcaaggactggagttgcctACCCCTGGTCTAGGCCCACCCCTGGTCTAGACCCACCCCTGGTCTAGGGTTAGGGTCTAGGCCCACCCTGGTCTAGGCCCACCCctggtctagggttagggttagggttagggtctagGCCCACCCTGGTCTAGGCCCACCTCTGGTCTAGGGTTAGGGTCTAGGCCCACCCCTGTTCTAGGCTCACCCCTGgtctagaccaactccaatttgtataccgccccaacaggtcaaACAGGTATACAGACAATGCAATCATCATCACACTgcgcactgccctatcccatttggacaagaggaatacctatgtaagaatgctgttccttgactacagctcagcattcaaaaccatagtaccctccaagctcatccttaagcttgagacccttggtctcaacccctccctgtgcgactgggtcctggacttcctgacgggccacccccaggtgatgaagttaggaaacaacatctccactttactgattctcaacactggggccccacaagggtgcgtgctcagccctctcctgtactccctgttcacccatggctgCGTGCCATGCAcaccttcaactcaatcatcaagtttgcagacggcacaacagtagtaggcttgatcaccaacaacgacgagacagacAATAtgaaggaggtgagggcactcagagtgtggtgtcaggaaaataacctctcactcaacgtcaacaaaacaaaggagataatcATGGAAACAGCAGTGGGTGCTGTGGAacgtttcaagttcctcggcgtacaattcacgaacaaactgaaatggtccacacagacagcgtggtgaagaaggcgcagcagcgcctcccCATACTCAGGAGgatgaagaaatgtggcttgtcacctaataccctcacaaacttctacagatgcacatttTAGAGCGTCTTgccggctgtatcaccgcctggtatggaaactgcaccgcccacaaccgctgggctctccagagggtagtgcggtctgcacaacgcatcactggggggcaaactatctgccctccgggacacctacagcacccgatgtcacaggaaggccaaaaagatcatcccctgagccactgcctgttcacctcatcaccatccagaaggcgaggtcagtacaggtgcatcaaagctgagaccgagagactgaaaaaatggcttctatctcaaggccatcagattgttaaacagccaccacaaaGGCAGAGAGGCTGCtgactacatacagacttgagGTCATGGGCCACTCTAACAAAATGGATCACTCGTCACTTTatcaatgccactttaataatgatgtttacatatttgcattactcatctcatatgtatgtactgtattttaccCCATCTATTGCATCTCGTCTATGCCGGTCAGTCATGgcccatccatatatttatatgtacatatttttttccatccctttacttagatgtgtgtgtattaggaaATTGTTATGGAactgttagattacatgttagatattgctgcattgtcgaactagaagcacaagcatttcgctgcagtcacattatcatctgctaaccatgtggatgtgaccaataacattacaatttgatatgatttgatttggcacagacacacatacacacacacacagacatacacacacacagacacacacgcatacacacacacatacatacacacacacagacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacatacacacacacacagacatacacacacacacatacacacacacacacacagacacacacacacacatacacacacacagacacacacacacacatacacatacacatacacacacacagacacacacacacaaatcaaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcatagtgctatacagaaacccagcctaaaaccccaaacagcaagcaatacaggtgtagaagcacggtggctaggaaaaactccctagaaagggcaagagctaggaagaaacctagagaagaaccaggctatgtggggtggccagtcctcttctggctgtgtcggacacacacacacacacacacacacacaaacacacacaaacacatgcaagcacacacacacacataaaacacgtacaaacacacacacacacacacagaacttaCCATTCTGCTCCCTGTGGATGAATAAGAAATTATAATCACAGAAAACAACAGGCATTAGAAACAGAAATTCAACAAAATATATAAGTAAGTGAAATGTGAG

Function

GO: NA

KEGG:

id description

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1613805 lncRNA downstream 656 78488742 ~ 78489472 (-) True G1412166
TU1613844 lncRNA downstream 3167 78486761 ~ 78486961 (-) True G1412202
TU1613842 lncRNA downstream 6445 78483477 ~ 78483683 (-) True G1412200
TU1613833 lncRNA downstream 33241 78456444 ~ 78456887 (-) True G1412193
TU1613811 lncRNA downstream 35867 78453472 ~ 78454261 (-) True fkbpl
TU1613845 lncRNA upstream 10199 78508973 ~ 78511632 (-) False G1412203
TU1613846 lncRNA upstream 10199 78508973 ~ 78511632 (-) False G1412203
TU1613849 lncRNA upstream 10199 78508973 ~ 78511632 (-) True G1412203
XM_021567182.2 mRNA downstream 35667 78441631 ~ 78454461 (-) False fkbpl
XM_036947864.1 mRNA downstream 39795 78441631 ~ 78450333 (-) False fkbpl
trnan-guu-13 mRNA downstream 68077 78421978 ~ 78422051 (-) True trnan-guu-13
trnae-uuc-7 mRNA downstream 71239 78418818 ~ 78418889 (-) True trnae-uuc-7
XM_021567181.2 mRNA downstream 75458 78404170 ~ 78414670 (-) True ccdc115
TU1613704 other downstream 171130 78316317 ~ 78318998 (-) False G1412091
TU1613705 other downstream 171130 78316317 ~ 78318998 (-) True G1412091
TU1613385 other downstream 422618 78066037 ~ 78067510 (-) False G1411845
TU1613851 other upstream 5517 78504291 ~ 78511632 (-) False G1412203

Expression Profile

TU1613810 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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TU1613810 Expression in each Bioproject

Bar chart with 20 bars.
TU1613810 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.