RNA id: XM_036948817.1


Basic Information

Item Value
RNA id XM_036948817.1
length 6065
RNA type mRNA
GC content 0.52
exon number 41
gene id LOC110513772
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9152136 ~ 9219692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCTTGGTTGGCACTTCCAACCAGATATAAGGAGGCTGAGGCCCCAGCATCCATAAGTCAGATACCTTCTTCCTCTGTGGGTCCTCCAAGAAGTACACATTCATCTGTAGGAGGGGAAAAATAAGTTATCCGTCACCATGAGTACGGACGCAGAGATGCAAATCTACGGCAAGGCTGCCATATACCTCCGTAAgcctgagagggagaggattgaGGCACAAGCCGCACCCTTTGATTCAAAGAACGCCTGCTACGTTACAGACAAGGTGGAGCTGTACCTTAAGGGTTTAGTCACTGCCAGGACAGAAGGGAAATGTACTGTGACAGTCACGAGACCTGACGGAAGTAAGGAGGAAGGAAAAGAGTTCAAAGATGCAGACATCTATGAGATGAACCCCCCTAAGTACGACAAGATTGAGGACATGGCCATGATGACCTACCTGAATGAAGCCTCTGTGTTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTCTTCTGTGCCACGGTGAACCCCTACAAGTGGCTCCCAGTGTACGACGAAGAGGTTGTCAACGCCtacagagggaagaagaggatggAGGCTCCACCCCATATCTTCTCCGTCTCTGACAACGCCTTTCAGTTCATGATGATTGataaggAGAACCAGTCCATCCTGATTACTGGAGAATCCGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAGTACTTTGCCACCATTGCAGTGTCTGGTGGCAAGAAGGAAGCAGACCCCAACAAAATGCAGGGGTCTCTTGAGGATCAGATCATTGCAGCTAACCCTCTGCTGGAGGCTTACGGTAACGCCAAGACAGTGAGGAACGACAACTCGTCTCGCTTTGGTAAATTCATCAGGATTCACTTCCAAGCTGGCAAACTGGCTAAAGCTGACATTGAGACCTacCTGCTGGAGAAGTCCAGAGTGTCCTTCCAGCTGCCCGATGAGAGAGGCTACCACATCTTCTTCCAGATGATGACAGGCCACAAACCTGAGATAGTTGAAATGTCGCTCATCACCACCAACCCCTACGACTTCCCCATGTGCAGCCAGGGACAGATCGCTGTGGCCAGCATCGACGACAATGAAGAGTTGGATGCCACAGATGATGCCATTACAATCCTGGGCTTCACTAATGATGAGAAGATTGGCATCTACAAGCTGACAGGAGCTGTAGTGCACCATGGAAACTTGAAATTCAAGCAGAAGCAGCGTGAGGAGCAGGCCGAGCCAGACGGCACAGAGGTGGCTGATAAAATTGGCTACCTGCTGGGCCTGAACTCAGCTGAGATGTTGAAGGCTATGTGCTACCCCAGAGTGAAGGTCGGCAACGAGTATGTGACCAAGGGACAGACTGTGGCTCAGGTTAATAACTCAGTCATGGCTCTGGCCAAGTCCATCTATGAGAGGATGTTCTTGTGGATGGTCATCCGTATCAATGAGATGTTGGACACCAAGAATCCAAGACAGTTCTATATCGGTGTGCTTGACATTGCCGGGTTTGAGATCTTTGATTACAACAGCATGGAGCAGCTGTGCATCAACTTCACCAATGAGAAACTGCAacagtttttcaaccacaccatgtTCGTCCTGGAGCAAGAGGAGTACAAGAAGGAGGGAATCGTCTGGGCCTTCATTGACTTCGGCATGGACTTGGCTGCCTGCATTGAGCTTATTGAGAAGCCATTGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGTCTTCAGACACTACCTTCAAGGACAAGCTGTACGCCCAGCATCTTGGCAAAACAAAGTCGTTTGAGAAGCCCAAGCCTGCCAAAGGCAAGCAAGAGGCCCACTTCTCCCTGGTGCATTACGCCGGCACTGTGGACTACAACATCACTGGATGGCTAGAGAAGAACAAGGACCCCCTGAACGACTCAGTTTGTCAGTTGTACGGGAAGTCAGGAGTCAAAATTTTGGCTGCCCtgtatccccctccccctccagagGACAAAGCCAAGAAAGGAGGCAAGAAGAAGGGTGGTTCCATGCAGACTGTGTCCTCCCAGTTCAGGGAGAACTTACATAAGCTGATGACCAACTTGAGGAGCACTCATCCTCACTTTGTGCGCTGCCTGATCCCCAACGAGTCAAAGACTCCAGGTCTGATGGAGAACTTCCTGGTTATCCACCAGCTCAGGTGTAATGGTGTACTGGAGGGTATCAGGATCTGCAGAAAGGGCTTCCCCAGCAGAATCCTCTATGCTGACTTCAAGCAGAgGTACAAAGTACTGAATGCCAGTGTCATCCCTGAGGGCCAGTTCATGGACAACAAGAAGGCTTCTGAGAAGCTGCTTGGgtccattgatgtgaatcacgaggattacaagtttggacacaccaagGTGTTCTTCAAAGCCGGTCTGCTGGGTgtcctggaggagatgagagatgagaagcTGGCTGCTCTGGTCGGCATGGTCCAGGCTCTCAGCCGTGGATTCCTCATGAGGAGAGAGTTCACcaagatgatggagaggagAGAGTCTATCTTCGCCATCCAGTACAACATCCGCTCATTCATGAATGTCAAAACCTGGCCATGGATGAAGTTGTACTTCAAGATCAAGCCCCTGCTGCAGAGCGCTGAGACTGAGAAGGAGCTGGCCAACATGAAGGAGAACTATGAGAAGATGAAGACAGATCTGGCCAAGGCTCTGTCCACAAAGAAGCAAATGGAGGAGAAGTTGGTGGCCCTGACACAGGAGAAGAACGACCTGTCACTCCAAGTCGCATCTGAAGGAGAGAGTCTGAACGATGCTGAGGAAAGGTGCGAGGGGCTCATCAAGAGCAAGATCCAGCAGGAGGCCAAACTCAAAGAGACGACCGAGaggctggaggatgaggaggagatcaATGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGagtgctctgagctgaagaaggaCATTGATGACCTGGAACTCACCCTGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAGACACTGGATgacctgcaggcagaggaggacaAAGTCAACACTCTGACCAAGGCCAAGACCAAGCTGGAACAGCAAGTGGACGACCTTGAGGGTTCTCTGGAGCAAGAGAAGAAGCTCCGTATGGACCTTGAGAGATCCAAGAGAAAGCTGGAGGGAGATCTGAAACTGGCCCAGGAGTCCATAATGGACCTGGAGAATGACAAGCAGCAAGCTGATGAGAAAATCAAGAAGAAGGAGTTTGAGACCACTCAGCTCCTCAGCAAGGTTGAGGATGAGCAGTCTCTGGGAGCTCAGCTGCAGAAGAAGATCAAGGAACTCcaggcCCGTattgaggagctggaggaggaaatTGAGGCTGAGCGTGCTGCCAGGGCTAAGGTTGAGAAGCAGAGGGCCGATCTCTCCAGGGAACTTGAGGAGATCAGCGAGAGGCTGGAGGAGGCCGGCGGCGCCACTGCTGCTCAGATTGAGATGAACAAGAAGCGTGAGGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCCACCCTGCAGCATGAGGCCACAGCCGCCGCTCTGCGCAAGAAGCAGGCCGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGCGTCAAGCagaagctggagaaggagaagagcgaGTACAAGATGGAGATTGATGACCTCTCCAGCAACATGGAGGCCGTTGCCAAGGCTAAGGGCAATCTGGAGAAGATGTGCCGTACTCTTGAGGACCAGCTGAGCGAGCTCAAGACTAAGAATGATGAGAATGTTCGCCAGGTCAATGACATCAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGTCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGAAAACAGGCCTTCACCCAGCAGGTGGAGGAACTAAAGAGGGCAGTTGAGGAGGAGGTCAAGgctaAAAACGCATTGGCCCACGGTGTCCAGTCTGCCCGCCATGACTGTGACCTCCTGAGGGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAACGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCTATCCAGCGcacagaggagctggaggaggccaAGAAGAAGCTGGCTCAGCGTCTGCAGGATGCTGAGGAGACCATTGAGGCAACCAACTCCAAGTGCGCCTCCCTGGAGAAGACCAAGCAGAGGctgcagggagaggtggaggacctCATGATTGATGTTGAGAGAGCCAACGCATTGGCTGCCAACCTCGACAAGAAGCAGAGGAACTTTGACAAGGTTCTGGCAGAATGGAAGCAGAAGTATGAGGAGGGCCAGGCTGAGCTGGAAGGAGCTCAGAAGGAGGCTCGCTCTATGAGCACTGAACTCTTCAAGATGAAGAACTCCTACGAGGAGGCTTTGGATCATCTGGAGActctgaagagagagaacaagaacctGCAACaggagATCTCTGACCTTACTGAGCAGATCGGAGAGACTGGCAAGAGCATCCATGAGCTGGAGAAGGCCAAGAAGACCGTGGAGACAGAAAAGTCTGAGATCCAGACCGCTCTGGAGGAGGCTGAGGGAACACTGGAGCACGAGGAATCCAAGATTCTGCGTGTGCAGCTGGAGCTGAACCAGATCAAGGGTGAGGTGGACAGGAAGATCGCAGAGAAGGACGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGGTGGTTGACTCCATGCAGAGCACCCTGGACTCTGAGGTCAGGAGCAGGAATGATGCCCTGAGggtgaagaagaagatggagggagacctGAACGAGATGGAGATCCAGCTGAGCCACTCCAACAGGATGGCCTCTGAGGCCCAGAAACAGCTGAGGAACGTCCAGGGACAGCTCAAGGATGCCCAATTGCACCTTGATGATGCCGTCCGTGTCGCAGAGGACATGAAGGAGCAGGCAGCCATGGTGGAGCGCAGAAACGGTCTGATGGTGGCTGAAATCGAGGAGCTGAGAGTTGCtctggagcagacagagagaggccgcAAAGTGGCTGAGACTGAGCTGGTTGACGCCAGCGAGCGTGTTGGACTACTGCACTCCCAGAACACCAGCCTTCTGAACACCAAGAAGAAGCTGGAGACTGACCTGGTGCAGGTGCAGGGAGAGGTGGACGACATCGTCCAGGAGGCCAGGAATGCAGAGGAGAAGGCCAAGAAGGCAATCACTGACGCGGCCATGATGGCtgaggagctgaagaaggagcaggACACCAGTTCTCACCtggagaggatgaagaagaacctGGAGATCACAGTCAAGGACCTGCAGCACCGCCTGGATGAGGCTGAGAATCTGGCCATGAAGGGAGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGCTCGAGACTGAGGTGGAGGCCGAGCAGAGAAGAGGTGCAGACGCAGTCAAGGGAGTCCGGAAGTATGAGCGCAGAGTCAAGGAGCTTACTTACCAGACTGAGGAGGATAAGAAGAACGTTAGCAGACTTCAGGACCTGGTAGATAAGCTGCAGATGAAAGTGAAGGCCTACAAGAGGCATTCTGAGGAGGCGGAGGAAGCAGCAAACCAGCACATGTCTAAGTTCAGGAAGGTTCAGCATGAGCTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGACTCAGGTCAACAAGCTCAGAGCCAAGACCCGTGACTCTGGAAAGGGAAAAGAAGTTGCTGAATAAACAAGACCAAAGAATTGAAGATCAAAGTCTTACCATTTTCCTGTGATGcataaaatatgattttcatggTGAAATGTTGACCATTGATTAAAAACATGTGGATCTACATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622259 lncRNA upstream 67393 9058623 ~ 9084743 (+) True G1418184
TU1622254 lncRNA upstream 85354 9009704 ~ 9066782 (+) True G1418179
TU1622246 lncRNA upstream 141652 8954672 ~ 9010484 (+) True G1418171
TU1622250 lncRNA upstream 157532 8987828 ~ 8994604 (+) True G1418175
TU1622081 lncRNA upstream 223799 8919017 ~ 8928337 (+) True LOC110485385
TU1622340 lncRNA downstream 83896 9257581 ~ 9258140 (+) True G1418255
TU1622344 lncRNA downstream 87036 9260721 ~ 9269416 (+) True LOC110494875
TU1622358 lncRNA downstream 126637 9300322 ~ 9355452 (+) True G1418270
TU1622108 lncRNA downstream 127587 9301272 ~ 9356785 (+) True G1418120
TU1622129 lncRNA downstream 135507 9309192 ~ 9508307 (+) False LOC110510627
XM_036948811.1 mRNA upstream 42909 9086192 ~ 9109227 (+) False LOC110519048
XM_036948813.1 mRNA upstream 102485 9030493 ~ 9049651 (+) True LOC110513340
XM_036948812.1 mRNA upstream 167347 8964809 ~ 8984789 (+) True LOC110495028
XR_005036791.1 mRNA upstream 214015 8910177 ~ 8938121 (+) False LOC110485385
XM_036948814.1 mRNA downstream 25054 9198739 ~ 9219692 (+) True LOC110513772
XM_036948836.1 mRNA downstream 60709 9234394 ~ 9247725 (+) False LOC110485387
XM_036948837.1 mRNA downstream 60985 9234670 ~ 9247725 (+) False LOC110485387
XM_036948828.1 mRNA downstream 86973 9260658 ~ 9273973 (+) False LOC110494875
XM_036948829.1 mRNA downstream 86973 9260658 ~ 9273973 (+) False LOC110494875
TU1622204 other upstream 42921 9108262 ~ 9109215 (+) True LOC110519048
TU1622063 other upstream 361415 8761682 ~ 8790721 (+) False LOC110485368
TU1622061 other upstream 361415 8761784 ~ 8790721 (+) True LOC110485368
TU1621964 other upstream 570985 8578605 ~ 8581151 (+) False G1418037
TU1622314 other downstream 60787 9234472 ~ 9246691 (+) True LOC110485387
TU1622317 other downstream 109541 9283226 ~ 9289097 (+) True LOC110487204
TU1622114 other downstream 130882 9304567 ~ 9305640 (+) False LOC110510627
TU1622121 other downstream 130882 9304567 ~ 9500952 (+) False LOC110510627
TU1622131 other downstream 130882 9304567 ~ 9500952 (+) False LOC110510627

Expression Profile