RNA id: TU1622129


Basic Information

Item Value
RNA id TU1622129
length 279
lncRNA type read_through
GC content 0.49
exon number 3
gene id LOC110510627
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9304567 ~ 9515031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGATGCAACTTGGAGTGCCAGGTCGTTCTTCTCCTGTGTCAGGGACACCAACTTCTCCTGTGTCAGGGACACCAACTTCTCCTCCATTTGCTTCTTTGTGGACagagccttggccaggtctattTTCATCTTCTCATAGTTCTCCTTCATGTTGGCCAGCTCCTTCTCAGTCTCAGCGCTCTGCAGCAGGGGCTTGATCTTGAAGTACAACTTCATCCATGGCCAGGTTTTGACATTCATGAATGAGCGGATGTTGTACTGGATGGCGAAGATGGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622344 lncRNA upstream 39776 9260721 ~ 9269416 (+) True LOC110494875
TU1622340 lncRNA upstream 51052 9257581 ~ 9258140 (+) True G1418255
TU1622287 lncRNA upstream 89725 9173096 ~ 9219467 (+) True G1418211
TU1622259 lncRNA upstream 224449 9058623 ~ 9084743 (+) True G1418184
TU1622254 lncRNA upstream 242410 9009704 ~ 9066782 (+) True G1418179
TU1622448 lncRNA downstream 28486 9536793 ~ 9537078 (+) True G1418352
TU1622455 lncRNA downstream 37218 9545525 ~ 9546046 (+) True G1418359
TU1622456 lncRNA downstream 41557 9549864 ~ 9550087 (+) True G1418360
TU1622459 lncRNA downstream 43321 9551628 ~ 9551876 (+) True G1418363
TU1622464 lncRNA downstream 47288 9555595 ~ 9568379 (+) True G1418367
XM_036948823.1 mRNA upstream 13218 9281460 ~ 9295974 (+) False LOC110487204
XM_036948822.1 mRNA upstream 13218 9281525 ~ 9295974 (+) False LOC110487204
XM_036948826.1 mRNA upstream 13218 9281672 ~ 9295974 (+) False LOC110487204
XR_005036788.1 mRNA upstream 14334 9281433 ~ 9294858 (+) False LOC110487204
XM_036948825.1 mRNA upstream 16398 9281432 ~ 9292794 (+) False LOC110487204
XM_036948841.1 mRNA downstream 73302 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA downstream 73302 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA downstream 73302 9581609 ~ 9592311 (+) False LOC110493376
XM_036948844.1 mRNA downstream 75083 9583390 ~ 9592311 (+) False LOC110493376
XM_036948845.1 mRNA downstream 92027 9600334 ~ 9685183 (+) False LOC110510389
TU1622114 other upstream 3552 9304567 ~ 9305640 (+) False LOC110510627
TU1622317 other upstream 20095 9283226 ~ 9289097 (+) True LOC110487204
TU1622314 other upstream 62501 9234472 ~ 9246691 (+) True LOC110485387
TU1622204 other upstream 199977 9108262 ~ 9109215 (+) True LOC110519048
TU1622063 other upstream 518471 8761682 ~ 8790721 (+) False LOC110485368
TU1622484 other downstream 80782 9589089 ~ 9589954 (+) False LOC110493376
TU1622481 other downstream 105524 9613831 ~ 9614948 (+) True LOC110510389
TU1622637 other downstream 430166 9938473 ~ 9939331 (+) True G1418488
TU1622613 other downstream 524540 10032847 ~ 10034985 (+) False G1418476
TU1622615 other downstream 524540 10032847 ~ 10034985 (+) False G1418476

Expression Profile