RNA id: TU1622135


Basic Information

Item Value
RNA id TU1622135
length 876
lncRNA type read_through
GC content 0.42
exon number 4
gene id LOC110510627
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9304567 ~ 9515031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatgtgcAGGTTTCTTACATAGATCATCCATGCTGCATAACGCTCTTTGAGGTTATACAACACAGAGGCTTCATTCAGGTAGGTCATCATGGCCATGTCCTCAATCTTGTCGTACTTAGGGGGGTTCATCTCATAGATGTCTGCATCTTTGAACTCTTTTCCTTCTCCTTACTGCCGTCAGGTTTGGTAACTGTTACAGTACACTTCCCGTCGGCCCTGGCAGTGACTAAACCCTTAAGGTACAGCTCCACCTTGTCTGTCACATAGCAGGCGTTCTTTGAATCAAAGGGTGCGGCTTGTGCCTCAATCCTTTCCCTCTCAGGCTTACGGAGGTATATGGCAGCCTTGCCGTAGATTTGCATCTCAGCGTCCGTACTCATGGTGACGGATAACTAGGAAAGAGATAAAACAAGAAACATGATTGACTCTGTGGTGCTTCCTCCCCAGTCAACAGAGTTAGATGAATGTGTACTTCTTGGAGGACCCTGTGACACATTAGAGTGTTGTGAAAACACACAAGTCATTTAGCCCCGAAGGGGCATTACAGCCATGTCCAATTTAATTACAATTTAATTATTCATTTTCCAAGTGACAACTCACTTTACTACACATTCTGTCaggaattcaaataaattcccCTGAAACTCAGTTACGTTCTAGAACACCAACTCAATTTACTACACATTCTGTCaggaattcaaataaattcccCTGAAAACCCAGTTACATTCTAGAACACCAACTCAATTTACTACACATTCTGTCaggaattcaaataaattcccCTGAAAACCCAGttacattctagaacaccctTTCATGTGCAGGAGCACCACTTCTGACTGTAAATGAAAGTCACAGATTTGAAGTAAAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622344 lncRNA upstream 50671 9260721 ~ 9269416 (+) True LOC110494875
TU1622340 lncRNA upstream 61947 9257581 ~ 9258140 (+) True G1418255
TU1622287 lncRNA upstream 100620 9173096 ~ 9219467 (+) True G1418211
TU1622259 lncRNA upstream 235344 9058623 ~ 9084743 (+) True G1418184
TU1622254 lncRNA upstream 253305 9009704 ~ 9066782 (+) True G1418179
TU1622412 lncRNA downstream 47641 9420765 ~ 9422225 (+) True G1418319
TU1622198 lncRNA downstream 93348 9466472 ~ 9496608 (+) True G1418125
TU1622426 lncRNA downstream 94756 9467880 ~ 9499327 (+) True G1418332
TU1622159 lncRNA downstream 96363 9469487 ~ 9500952 (+) False LOC110510627
TU1622192 lncRNA downstream 97272 9470396 ~ 9501748 (+) False G1418122
XM_036948823.1 mRNA upstream 24113 9281460 ~ 9295974 (+) False LOC110487204
XM_036948822.1 mRNA upstream 24113 9281525 ~ 9295974 (+) False LOC110487204
XM_036948826.1 mRNA upstream 24113 9281672 ~ 9295974 (+) False LOC110487204
XR_005036788.1 mRNA upstream 25229 9281433 ~ 9294858 (+) False LOC110487204
XM_036948825.1 mRNA upstream 27293 9281432 ~ 9292794 (+) False LOC110487204
XM_036948821.1 mRNA downstream 61087 9434211 ~ 9456499 (+) False LOC110510627
XM_036948841.1 mRNA downstream 208485 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA downstream 208485 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA downstream 208485 9581609 ~ 9592311 (+) False LOC110493376
XM_036948844.1 mRNA downstream 210266 9583390 ~ 9592311 (+) False LOC110493376
TU1622114 other upstream 14447 9304567 ~ 9305640 (+) False LOC110510627
TU1622317 other upstream 30990 9283226 ~ 9289097 (+) True LOC110487204
TU1622314 other upstream 73396 9234472 ~ 9246691 (+) True LOC110485387
TU1622204 other upstream 210872 9108262 ~ 9109215 (+) True LOC110519048
TU1622061 other upstream 529366 8761784 ~ 8790721 (+) True LOC110485368
TU1622111 other downstream 95636 9468760 ~ 9500613 (+) False LOC110510627
TU1622143 other downstream 95636 9468760 ~ 9500613 (+) False LOC110510627
TU1622151 other downstream 96363 9469487 ~ 9500952 (+) False LOC110510627
TU1622117 other downstream 100588 9473712 ~ 9506097 (+) False LOC110510627
TU1622132 other downstream 102597 9475721 ~ 9507812 (+) False LOC110510627

Expression Profile