RNA id: TU1622122


Basic Information

Item Value
RNA id TU1622122
length 692
lncRNA type read_through
GC content 0.40
exon number 4
gene id LOC110510627
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9304567 ~ 9515031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatggatcagtaataacaatgaacatgataaatatatggatagacttggatagaatataatatatcaaGCATTTAGTGCTCAGTGCTCAGCTTGGATTTTCAATTTTGAAGTACCAATTTTTCAATGTTTTGCCCTTCCTGAAATGTGCTGCTTGGTGATCTTAAATACAGCCGAACCAGTGTAAAAGGTCAGTATTGACCTCTGTGAAGACTGAATCATAGGTGGTATTGATGTGGTCATATCTGAACATGAGTCAGGTACAGGTTTAGCAGCAGTTCTGTACCTTTCCAGAGTCACGGGTCTTGGCTCTGAGCTTGTTGACCTGAGTCTCAGCGATGTCAGCACGCTCCTCAGCCTCCTCCAGCTCATGCTGAACCTTCCTGAACTTAGACATGTGCTGGAGGAGGCTGAGGAGCGTGCTGACATCGCTGAGACTCAGGTCAACAAGCTCAGAGCCAAGACCCGTGACTCTGGAAAGGGAAAAGAAGTTGCTGAATAAACAAGACCAAAGTATTGGAGATCAAAGTCTTAGCATTTTCCTGTGATGcataaaatatgattttcatggTGAAATGTTGAGCATTGATTAAAAACATGTGAATCTACATACACTTCCTTTGTGACTGTGGATTTATTACTCAGCAAACAGATGTTTAATACCATTAAATATTGTAATTTAATTAAAGGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622344 lncRNA upstream 84599 9260721 ~ 9269416 (+) True LOC110494875
TU1622340 lncRNA upstream 95875 9257581 ~ 9258140 (+) True G1418255
TU1622287 lncRNA upstream 134548 9173096 ~ 9219467 (+) True G1418211
TU1622259 lncRNA upstream 269272 9058623 ~ 9084743 (+) True G1418184
TU1622254 lncRNA upstream 287233 9009704 ~ 9066782 (+) True G1418179
TU1622198 lncRNA downstream 9893 9466472 ~ 9496608 (+) True G1418125
TU1622426 lncRNA downstream 11301 9467880 ~ 9499327 (+) True G1418332
TU1622159 lncRNA downstream 12908 9469487 ~ 9500952 (+) False LOC110510627
TU1622192 lncRNA downstream 13817 9470396 ~ 9501748 (+) False G1418122
TU1622202 lncRNA downstream 14157 9470736 ~ 9502011 (+) True G1418129
XM_036948823.1 mRNA upstream 58041 9281460 ~ 9295974 (+) False LOC110487204
XM_036948822.1 mRNA upstream 58041 9281525 ~ 9295974 (+) False LOC110487204
XM_036948826.1 mRNA upstream 58041 9281672 ~ 9295974 (+) False LOC110487204
XR_005036788.1 mRNA upstream 59157 9281433 ~ 9294858 (+) False LOC110487204
XM_036948825.1 mRNA upstream 61221 9281432 ~ 9292794 (+) False LOC110487204
XM_036948841.1 mRNA downstream 125030 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA downstream 125030 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA downstream 125030 9581609 ~ 9592311 (+) False LOC110493376
XM_036948844.1 mRNA downstream 126811 9583390 ~ 9592311 (+) False LOC110493376
XM_036948845.1 mRNA downstream 143755 9600334 ~ 9685183 (+) False LOC110510389
TU1622114 other upstream 48375 9304567 ~ 9305640 (+) False LOC110510627
TU1622317 other upstream 64918 9283226 ~ 9289097 (+) True LOC110487204
TU1622314 other upstream 107324 9234472 ~ 9246691 (+) True LOC110485387
TU1622204 other upstream 244800 9108262 ~ 9109215 (+) True LOC110519048
TU1622061 other upstream 563294 8761784 ~ 8790721 (+) True LOC110485368
TU1622111 other downstream 12181 9468760 ~ 9500613 (+) False LOC110510627
TU1622143 other downstream 12181 9468760 ~ 9500613 (+) False LOC110510627
TU1622151 other downstream 12908 9469487 ~ 9500952 (+) False LOC110510627
TU1622117 other downstream 17133 9473712 ~ 9506097 (+) False LOC110510627
TU1622132 other downstream 19142 9475721 ~ 9507812 (+) False LOC110510627

Expression Profile