RNA id: TU1622151


Basic Information

Item Value
RNA id TU1622151
length 325
RNA type TUCP
GC content 0.55
exon number 2
gene id LOC110510627
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9304567 ~ 9515031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTGAACTGTCCCTGGATGTTCCTCAGCTGTTTCTGGGCCTCAGAGGCCTGCCTGTTGGAGTGGCTCAGCTGGATCTCCATCTCATTCaggtctccctccatcttcttcttcaccCTCAGGGCATCATTCCTGCTCCTGACCTCAGAGTCCAGGGTGCTCTGCATGGAGTCAACCACCCTCTGGCTGTTCCTCTTGATCTGCTCCATCTCCTCGTCCTTCTCAGCGATCTTCCTGTCCACCTCACCCTTGATCTGGTTCAGCTCCAGCTGCACACGCAGAATCTTGGATTCCTCGTGCTCCAGTGTTCCCTGGACAAACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622122 lncRNA upstream 12908 9354015 ~ 9456579 (+) False LOC110510627
TU1622412 lncRNA upstream 47262 9420765 ~ 9422225 (+) True G1418319
TU1622135 lncRNA upstream 96363 9320087 ~ 9373124 (+) False LOC110510627
TU1622363 lncRNA upstream 97774 9319657 ~ 9371713 (+) True G1418274
TU1622389 lncRNA upstream 99018 9370029 ~ 9370469 (+) True G1418298
TU1622448 lncRNA downstream 35841 9536793 ~ 9537078 (+) True G1418352
TU1622455 lncRNA downstream 44573 9545525 ~ 9546046 (+) True G1418359
TU1622456 lncRNA downstream 48912 9549864 ~ 9550087 (+) True G1418360
TU1622459 lncRNA downstream 50676 9551628 ~ 9551876 (+) True G1418363
TU1622464 lncRNA downstream 54643 9555595 ~ 9568379 (+) True G1418367
XM_036948821.1 mRNA upstream 12988 9434211 ~ 9456499 (+) False LOC110510627
XM_036948823.1 mRNA upstream 173513 9281460 ~ 9295974 (+) False LOC110487204
XM_036948822.1 mRNA upstream 173513 9281525 ~ 9295974 (+) False LOC110487204
XM_036948826.1 mRNA upstream 173513 9281672 ~ 9295974 (+) False LOC110487204
XR_005036788.1 mRNA upstream 174629 9281433 ~ 9294858 (+) False LOC110487204
XM_036948841.1 mRNA downstream 80657 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA downstream 80657 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA downstream 80657 9581609 ~ 9592311 (+) False LOC110493376
XM_036948844.1 mRNA downstream 82438 9583390 ~ 9592311 (+) False LOC110493376
XM_036948845.1 mRNA downstream 99382 9600334 ~ 9685183 (+) False LOC110510389
TU1622109 other upstream 108725 9307031 ~ 9360762 (+) False LOC110510627
TU1622153 other upstream 108725 9307031 ~ 9360762 (+) False LOC110510627
TU1622155 other upstream 108966 9307031 ~ 9360521 (+) False LOC110510627
TU1622150 other upstream 109532 9306512 ~ 9359955 (+) False LOC110510627
TU1622114 other upstream 163847 9304567 ~ 9305640 (+) False LOC110510627
TU1622484 other downstream 88137 9589089 ~ 9589954 (+) False LOC110493376
TU1622481 other downstream 112879 9613831 ~ 9614948 (+) True LOC110510389
TU1622637 other downstream 437521 9938473 ~ 9939331 (+) True G1418488
TU1622613 other downstream 531895 10032847 ~ 10034985 (+) False G1418476
TU1622615 other downstream 531895 10032847 ~ 10034985 (+) False G1418476

Expression Profile