RNA id: TU1622481


Basic Information

Item Value
RNA id TU1622481
length 383
RNA type TUCP
GC content 0.53
exon number 3
gene id LOC110510389
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9600334 ~ 9685183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTAAGCTGAAGGAGAGGCTGGAGGTGCTGAAGAAAACATTGGATGTTCCAGCTCTGCTGCTGACCACTCTGGAGGAGATGAACCCACACGAGCTGAAGACATTTCAGTGGTATCTGTATAGGCCCTGGCTGCCTGGCTGTCCTCTCATCCCAGAGAGTCAGCTGGAGAACactgacagacaggacacagtGGATCAGATGGTGAAGAGATACGGCCCTGAGAGAGCTGTGGGGAACATGGGGAGGATCCTGAGGGGGATGAATCGGGATGATCTGGCAGAGAGGTTACAGAGAGATCACACTAGAGGCACTGCCTCACCCTCTCACTTGTCCTTATTCCAACTCAGGCCCAAATCCTTCTGTTACTCTTCATGGCCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622498 lncRNA upstream 8146 9605231 ~ 9605685 (+) True G1418395
TU1622497 lncRNA upstream 10083 9603175 ~ 9603748 (+) True G1418394
TU1622490 lncRNA upstream 19639 9593775 ~ 9594192 (+) True G1418391
TU1622482 lncRNA upstream 20934 9592049 ~ 9592897 (+) False LOC110493376
TU1622483 lncRNA upstream 20934 9592104 ~ 9592897 (+) True LOC110493376
TU1622502 lncRNA downstream 3524 9618472 ~ 9652422 (+) False G1418397
TU1622507 lncRNA downstream 13830 9628778 ~ 9634519 (+) True G1418400
TU1622503 lncRNA downstream 34295 9649243 ~ 9654573 (+) True G1418397
TU1622514 lncRNA downstream 51426 9666374 ~ 9666579 (+) True G1418407
TU1622519 lncRNA downstream 76181 9691129 ~ 9691396 (+) True G1418411
XM_036948841.1 mRNA upstream 21520 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA upstream 21520 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA upstream 21520 9581609 ~ 9592311 (+) False LOC110493376
XM_036948844.1 mRNA upstream 21520 9583390 ~ 9592311 (+) False LOC110493376
XM_036948821.1 mRNA upstream 157332 9434211 ~ 9456499 (+) False LOC110510627
XM_036948850.1 mRNA downstream 132360 9747308 ~ 9766104 (+) False mvb12a
XM_036948849.1 mRNA downstream 132361 9747309 ~ 9768242 (+) False mvb12a
XR_005036798.1 mRNA downstream 132361 9747309 ~ 9772113 (+) False mvb12a
XR_005036799.1 mRNA downstream 132396 9747344 ~ 9772113 (+) True mvb12a
XM_036948851.1 mRNA downstream 160531 9775479 ~ 9780712 (+) True LOC110518985
TU1622484 other upstream 23877 9589089 ~ 9589954 (+) False LOC110493376
TU1622132 other upstream 106019 9475721 ~ 9507812 (+) False LOC110510627
TU1622117 other upstream 107734 9473712 ~ 9506097 (+) False LOC110510627
TU1622151 other upstream 112879 9469487 ~ 9500952 (+) False LOC110510627
TU1622111 other upstream 113218 9468760 ~ 9500613 (+) False LOC110510627
TU1622637 other downstream 323525 9938473 ~ 9939331 (+) True G1418488
TU1622613 other downstream 417899 10032847 ~ 10034985 (+) False G1418476
TU1622615 other downstream 417899 10032847 ~ 10034985 (+) False G1418476
TU1622619 other downstream 417899 10032847 ~ 10034985 (+) False G1418476
TU1622664 other downstream 422017 10036965 ~ 10039706 (+) False G1418503

Expression Profile