RNA id: XM_036948850.1


Basic Information

Item Value
RNA id XM_036948850.1
length 950
RNA type mRNA
GC content 0.53
exon number 9
gene id mvb12a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 9747308 ~ 9772113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGCTTGATGGGAATAGTAGTCATAGAATCTCCTGTATTTCCTGGAAAGGAGACGAGGAAAAGTCATAAGAAGTTCTTGCTCGCCTCTAAAAAGTTGTTTACCTGACTTCATCTACGGTGTAAAGCGAGAAAGGTTGAAACGAAAAACAGAatGTCTCTGATGGAGCACGGTGGTGGCGCCCACAACAGGCCGGTGACGGCAGTGGCCTGGGCCTCCAACAGCAGCACCTGTCCCAAAGACTTCAACCTGatCAGTATAACTGAGGATGGAGCTGCTGCAAACTTCACACGGAGCTTCGCCATGAAGGCTGGCTACTACCTCTGCTACAGCAAGGACATGTCAGGTGGTATGGTAGTATCAGATGTCCAGGTGATCTCAGACAAGGAGACTGTTCCTCATGGGTACTGTTACATACCTGAACACCTGGAGCCTAgggcCTCCGTGTCTAAGAAGAAGCGTGTGTGTGTCCGCATGGTGCCAGTGGGCGGTGTGGAGACTGCTGTACTGGACATCAAACTGACTGCTAAGACTAGGAGGATGCTGCAACACTACACCTGCTTgggggaCATGCATGGCTATGTGATGTGGTGTAAGAAGGGGCCCTTCTCCAGCCCTCTACCCCAGGCAAAGCCTCGCAGCCTCAGCCTTGACCTCCGTCAGCTCTCGCTGGACCAGAACCCCCCTCCGCTACCCCTCAGACCCAGCAACGCTCCACCCATGCCCCCTGGCAGGAAGCTCAGCCATCGCCGCAGCAACCTCCAATTGAACGATGCTGTGGACAAAGTGGTTGACAGCAGCAACATCTACGGCATCTCAGccaTAGATGGTGTTCCCTTCACTCTACACCCCAAGTTCAAGACCCAAACGAACGGCACGACTCCAACAAACACTCTGAAATACCATGagtctaaactctctctctctcctccatgagtctaaactgtctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622555 lncRNA upstream 2714 9743187 ~ 9744594 (+) True G1418440
TU1622541 lncRNA upstream 39074 9705530 ~ 9708234 (+) True G1418430
TU1622528 lncRNA upstream 52657 9693598 ~ 9694651 (+) True G1418420
TU1622519 lncRNA upstream 55912 9691129 ~ 9691396 (+) True G1418411
TU1622514 lncRNA upstream 80729 9666374 ~ 9666579 (+) True G1418407
TU1622557 lncRNA downstream 3094 9769198 ~ 9769852 (+) True G1418442
TU1622559 lncRNA downstream 16107 9782211 ~ 9782574 (+) True G1418444
TU1622562 lncRNA downstream 18694 9784798 ~ 9785060 (+) True G1418447
TU1622521 lncRNA downstream 37916 9804020 ~ 9804783 (+) True LOC110517298
TU1622564 lncRNA downstream 41927 9808031 ~ 9808293 (+) True G1418449
XM_036948845.1 mRNA upstream 62125 9600334 ~ 9685183 (+) False LOC110510389
XM_036948846.1 mRNA upstream 62125 9600334 ~ 9685183 (+) False LOC110510389
XM_036948841.1 mRNA upstream 154997 9581609 ~ 9592311 (+) False LOC110493376
XM_036948842.1 mRNA upstream 154997 9581609 ~ 9592311 (+) False LOC110493376
XM_036948843.1 mRNA upstream 154997 9581609 ~ 9592311 (+) False LOC110493376
XM_036948851.1 mRNA downstream 9375 9775479 ~ 9780712 (+) True LOC110518985
XM_036948858.1 mRNA downstream 19689 9785793 ~ 9804783 (+) False LOC110517298
XM_036948852.1 mRNA downstream 19690 9785794 ~ 9804783 (+) False LOC110517298
XM_036948853.1 mRNA downstream 19690 9785794 ~ 9804783 (+) False LOC110517298
XM_036948855.1 mRNA downstream 19690 9785794 ~ 9804783 (+) False LOC110517298
TU1622481 other upstream 132360 9613831 ~ 9614948 (+) True LOC110510389
TU1622484 other upstream 157354 9589089 ~ 9589954 (+) False LOC110493376
TU1622132 other upstream 239496 9475721 ~ 9507812 (+) False LOC110510627
TU1622117 other upstream 241211 9473712 ~ 9506097 (+) False LOC110510627
TU1622151 other upstream 246356 9469487 ~ 9500952 (+) False LOC110510627
TU1622637 other downstream 172369 9938473 ~ 9939331 (+) True G1418488
TU1622613 other downstream 266743 10032847 ~ 10034985 (+) False G1418476
TU1622615 other downstream 266743 10032847 ~ 10034985 (+) False G1418476
TU1622619 other downstream 266743 10032847 ~ 10034985 (+) False G1418476
TU1622664 other downstream 270861 10036965 ~ 10039706 (+) False G1418503

Expression Profile