RNA id: TU1629138


Basic Information

Item Value
RNA id TU1629138
length 2557
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC118940331
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15614864 ~ 15626817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATTTCTTTTCATTCTGATGTGAGATTGTAAACAAacgtggagagaaaaaaaaaagaaatgcagAACAGAACTAACCTCAATTTCTAGATACCATGTGACGTGCCATTTTTGTCTCTTGAGTGGCACGCGATACCTTTCAAGAAAAAAACTAAACAGACTTCTGTGAATTGCCATTTTGCTCGTTGTTATGAAGTGTTGTTGATTATTCCTCCATGCTGCATATCCTGTTGTCATGACGCCTCAGGTCCACCCACTTCAAAGCAGCTGATTGTACACTAACTAGCAACACAAATCAGGACTTTTATTAAAGTAAAAGTGTTTTAGTACTCTTTTAGTACACTTTCTTGTGTTTCCAGATTTCTTAGATGGGACTGACGGAAGcactttttaaattattattgttattattatatggTGGGTTTtatcattattattgttattattagatGGTGTTTTTTTCATGTTTTCTTAATTTTTAAAGAACATATACATTCTTATAGCTACTAAACCGAACCCAGGTCTTTCTGAATGCAACACTACTGTATTAACTAGCACACTCAGCCTTGGAAGCACACACCATGCACACTGTAACTACACCCCATACACTCTGTAACTACACCCCatacatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccccataatactgtaactacaccccataatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccccataatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccccatacatactgtaactacaccCCATACATAGTCACATACATTTCTATATGTTTTGACTCACGCACTCACACACTCTTCATCAGGTATCCACTTCGTGTGGGTGGGTTACATGTACAATTATAACCTCTGCCGTGTCCTTTATAGAACCTGGTGGGTGTGACACTCCTGAGACCAGAAAAAATATCAGGCTTGTAACTTGGCTGGTGAAGGCACTGCCTCCCTTATTCTGTCCAAACAGCCCCCTTTTGCTTCGTATCTTTCTCCAGTCCAGTCCGGCTCAGTGGGCCCCTATAACACTGGTCCCAACCCTCACCACCAAGAACCTGTCTTTAACTCTGGCTCTGTTTCTGATTTGTTTGTGTAGTGGTGACTTTGTCGTGATGTTCCTCTGCCTCTTTGCGTGATttgctatttttatttaatttggcAAATTTCAAGCATGgcaaaaatatagtattttgtCAAATGTATCCTTTTTCTACACCaagtttgttttttaaatgttgtaaAAGTCTCAGCATTTGTTAAGGCGCAAGTACCACCCGCCTGCTAACTGCAACTTGAGGGCTTTTCTGTTTGATTTGTGAAACATTTTAAAGCAACAGTGCTTTGGTTTTGTTGAAGAGAGAAACGTTGGTTGGAATTTAAAAGTGAGGCACACCTTCCGTCTGGAATGATGTTGAGCTGCTTGCAATCATACCAATTCCCCTGCTACCCCCAAACAACACTTTGAAACAGGAACTATCACAGTACCTAAATCTGTGTGTTATCCTTCCTTCTTTCACACTGGCAGTTGAAACGGTTCAACATGGAATCTGTGACATGTCCGGCTAAAGAGCCTCCATCTCTCCCGCTCCAATCTGACAGTCAGAACACCACCTATTACATTGTGTAGTTTTATGAGGCTTGTGTGTCATAATGTTGTGTTTTACTGCGAAGGGAGGCGGGACAGGAAAGCAGCAGGGGTCCTGTGCTACAGTAACCATTTGTTTTAGTCTGGCAGAATGCTGTAATCCTGTTTAGTATATTGGGACTGTAGAAGTATGATAGTTCAAATACATATTATTTTCTTTCCGTGGACATTCGACTAACAAACATGAAAGCGTGCAAACCTAGAAACTGTAAAATGTTGAGATGAGATGGCACAATCCGAAAACGAAATAAGGCGTTTTTTTAAAAACCTTAAACTTAATATTAATGTAATGTTCAGTCGTACTTAATAAAGTGTAGTGTGATTTTCTACATTTGCTTGTATGGCAGATGTTAGTTGTATACTTGAAAGTCATTGAAATGAATGAGAATCTCAACCTCACAGTCTAATTATGGATTATTTATTACTATTGTGTTTTATTATGAATCAATCTGTGAAAGATGGAATGCCTTTTTTCAGCCTCTAATCGTTAGCTCAATCTTTACAACACATCAGGCCTATATTGGAAGTAGTATTAAAACTATAGCAGAAAAagtatagtgtatatattttAGTATTTTAATTCTGTAATGAAAATCACTCCATATAATACAAGGATACTTTGCCTAAATTATTTCATTACAAAATGCTAGTGAGGTTTTGTTCATGAACGTCAAACCCCCCCCAGACTGGGAGATAGAGTGTCTTGCTGCAGTTAGATATATCTGGACTAGGGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629140 lncRNA downstream 2289 15621234 ~ 15621532 (-) False LOC118940331
TU1629136 lncRNA downstream 5539 15615141 ~ 15618282 (-) False LOC118940331
TU1629133 lncRNA downstream 5945 15615141 ~ 15617876 (-) False LOC118940331
TU1629134 lncRNA downstream 5945 15615141 ~ 15617876 (-) False LOC118940331
TU1629089 lncRNA downstream 46804 15576376 ~ 15577017 (-) True G1423107
TU1629141 lncRNA upstream 751 15627128 ~ 15628048 (-) False LOC110485613
TU1629147 lncRNA upstream 2706 15629083 ~ 15629553 (-) False LOC110485613
TU1629152 lncRNA upstream 13441 15639818 ~ 15640559 (-) True G1423155
TU1629892 lncRNA upstream 17647 15644024 ~ 15704231 (-) False LOC110485613
TU1629894 lncRNA upstream 18053 15644430 ~ 15645067 (-) False G1423768
XM_036948329.1 mRNA downstream 155565 15444480 ~ 15468256 (-) True LOC118936458
XM_036948328.1 mRNA downstream 185416 15288411 ~ 15438405 (-) False LOC118940092
XM_036948330.1 mRNA upstream 1171 15627548 ~ 15704265 (-) False LOC110485613
XM_036949091.1 mRNA upstream 117838 15744215 ~ 15760194 (-) True LOC110487262
XM_036949087.1 mRNA upstream 151310 15777687 ~ 15797879 (-) True LOC110485609
XR_005036850.1 mRNA upstream 224297 15850674 ~ 15871462 (-) False LOC110487244
XM_036949088.1 mRNA upstream 224297 15850674 ~ 15871731 (-) False LOC110487244
TU1629094 other downstream 39728 15583695 ~ 15584093 (-) True G1423112
TU1628867 other downstream 210224 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 218647 15383119 ~ 15405174 (-) True G1422918
TU1628844 other downstream 288930 15333878 ~ 15334891 (-) True G1422897
TU1628852 other downstream 376479 15006839 ~ 15247342 (-) True LOC118940320
TU1629986 other upstream 182309 15808686 ~ 15831010 (-) True G1423836
TU1630061 other upstream 358896 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 743380 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 780354 16406731 ~ 16410128 (-) False G1424051
TU1630257 other upstream 780354 16406731 ~ 16410128 (-) False G1424051

Expression Profile