RNA id: XM_036949091.1


Basic Information

Item Value
RNA id XM_036949091.1
length 1784
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110487262
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15744215 ~ 15760194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCTTGTCAACCCACCCGCTTCTGCAGCCAAAATACAGCCGTTCCATTTGACACAATGTTCGGTGTCAAAACTCTCCGAACTGTCGGTCCAGCAGTGTGTAGACGTGGTGCCTCTGTGCTGTGGAAGCCAACTAGGACCCAGAGCCGAACCCAAAGCGCGGCGGCTGGACAGAGAGTGGACATCGGGGGGATCTACCCGCCAATAGCCACGCCGTTTACTCAGAAAGAGGACGTGGACTATCAGAAACTGGATGAAAACCTGCAGAAGTATGCAAAGATTCCTTTCAAAGGTCTGGTGGTGCAGGGCTCTAATGGAGAGTACCCGTACCTggcggaggaggagagggtagaggtggTGAGGAGGGTCAGACTGGCACTGCCCACAGACAAGCTGGTCATGGCAGGATCCGGATGTGAATCCACCAAAGCTACAGTAGTGATGACAGAGAGGATGGCGGGGGCGGGGGCAGACCTGGTTCTCGTGGTAACGCCATGCTTCTACAAGGGCATGATGGACAGCAGGGCGCTGGTTCACCACTTCACACAGgTGGCAGACAGTAGTCCAGTACCAGTAGTTCTGTACAGTGTCCCGGCTAACACAGGTCTTGACCTCCCTGTTGATGCTGTGGTGAGACTGGCCCAACACCCTAACATACTGGGACTCAAGGACAGCGGAGGAGACATCACCAGGATCGCTCTGATCGTTCACAAAACGAAGCCGCAGGATTTTCAGGTTCTGGCGGGTTCCGCTGGGTTCCTTATGGCGGCGTATTCCGTGGgttgtGTGGGCGGTGTGTGTGCGCTTGCCAACGTGCTGGGGCGTGAGGTGTGTGAGCTGGAGCAGCTGTGTGTGTCGGGGCGgtgggaagaagccactgctctgcAGCAGCGCCTCATAGAGCCCAACACTGCTGTGACCAGGAAGTTTGGCGTTCCCGCTCTCAAGCAGGCGATGGAGTGGTTTGGTTACCACGGTGGCACCTGTCGCTCTCCTCTTCAACCGCTCTCAGAGGCTGAATCACAGCAGCTTAGACTGGACTTCTCCACCAACGGCTGGCTCTGAAGGGGACAGGGGGCGGGACTGAGTAGAAGACAGGGGACTGGGCTTGCTCCAGGTTGAAGTTGCCATCATAGAATAGAATGCGTAGAACATTAtggcatcattgacttgaatgtggATTTCCTTTCTACTCATTCTAATTATATGGTTGTctctaaccacagatctaggatcaggtgacTCTACACccagtcctaaccttaaccattagggagTTGATAAAAGATGTGACCCTGTATCAGTTGTTAGGGGCAACATCAACCTACTGTGACTGTTTCATACATGCATAGCTTCCTTCCCTTCCTGGCCTTAAATCTAAGAGGACTTGATAGTTGGAAGCAATAACCAATCCAGTCCTTTCACCTATCAGTGGTCTTGCTGCCTTGCTATATAGGAGGCCGTTGTGAGGGTGTTGTGTGTTAGAGACGTCAACACTGTAGGACTACCCCAAGGCTTCCCACCTGTAATGGCCATAGGGGTTTTCAATGTGTCCCACATcacaccctattcactacatagtgcactgcggttgaccagagccctatgggtcctggttaaatagtagtgcactgtataggggaaTGGGTTGCCATTTTGGGACGCACCCTTTGACATGAATTAAATACAGCAGGAAATAAAAAGACATGTAAGGAATCAGTTTGTTTATATTCCCGAAGGATGTTTTTCAAATAAAGAGAAAGACCACCTACCCAGCAACCGTCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016829 lyase activity molecular_function

KEGG:

id description
K18123 HOGA1; 4-hydroxy-2-oxoglutarate aldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629912 lncRNA downstream 2671 15740782 ~ 15741544 (-) True G1423783
TU1629942 lncRNA downstream 4539 15739291 ~ 15739676 (-) True G1423805
TU1629940 lncRNA downstream 12775 15731041 ~ 15731440 (-) True G1423803
TU1629892 lncRNA downstream 39984 15644024 ~ 15704231 (-) False LOC110485613
TU1629891 lncRNA downstream 39984 15646970 ~ 15704231 (-) True LOC110485613
TU1629966 lncRNA upstream 4081 15764275 ~ 15775981 (-) True G1423821
TU1629983 lncRNA upstream 44151 15804345 ~ 15804568 (-) True G1423834
TU1629994 lncRNA upstream 75380 15835574 ~ 15838677 (-) True G1423844
TU1629996 lncRNA upstream 80103 15840297 ~ 15840845 (-) True G1423845
TU1629954 lncRNA upstream 90770 15850964 ~ 15852360 (-) True LOC110487244
XM_036948330.1 mRNA downstream 39950 15627548 ~ 15704265 (-) False LOC110485613
XR_005036851.1 mRNA downstream 118672 15614864 ~ 15625543 (-) False LOC118940331
XR_005036852.1 mRNA downstream 118678 15614864 ~ 15625537 (-) False LOC118940331
XM_036948329.1 mRNA downstream 275959 15444480 ~ 15468256 (-) True LOC118936458
XR_005036848.1 mRNA downstream 369098 15373361 ~ 15375117 (-) True LOC118940327
XM_036949087.1 mRNA upstream 17493 15777687 ~ 15797879 (-) True LOC110485609
XR_005036850.1 mRNA upstream 90480 15850674 ~ 15871462 (-) False LOC110487244
XM_036949088.1 mRNA upstream 90480 15850674 ~ 15871731 (-) False LOC110487244
XM_036948331.1 mRNA upstream 138692 15898886 ~ 15917523 (-) True LOC110518551
XM_036949095.1 mRNA upstream 176518 15936712 ~ 15938552 (-) False LOC110485584
TU1629094 other downstream 160122 15583695 ~ 15584093 (-) True G1423112
TU1628867 other downstream 330618 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 339041 15383119 ~ 15405174 (-) True G1422918
TU1628844 other downstream 409324 15333878 ~ 15334891 (-) True G1422897
TU1628852 other downstream 496873 15006839 ~ 15247342 (-) True LOC118940320
TU1629986 other upstream 48492 15808686 ~ 15831010 (-) True G1423836
TU1630061 other upstream 225079 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 609563 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 646537 16406731 ~ 16410128 (-) False G1424051
TU1630257 other upstream 646537 16406731 ~ 16410128 (-) False G1424051

Expression Profile