RNA id: XM_036949152.1


Basic Information

Item Value
RNA id XM_036949152.1
length 4964
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110494924
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16819145 ~ 16836715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTGGCACctagatgcagtgcctcagaccgctcgGGAGCCCCGAGTTAAAGAGGGAAATGTTTTAACTGGCACAGAAACACGAACGCATAGACTCCAAGCGTCTACTTGGCAGACAGGGAcgaagaagaaagagaagaacgTGTGATAAAGAAGATGATAAATGAGCTCTGGTGGAGGTTTAGAGTACAGCTGAACCATTCTGACAGAGAGTAGCACGCTGCAGACTTGTCTTAGTAATGGATGTGTACTtcggggaggggtggagggatggagggagtcatcaagagaggagagaaagggaggatgagTTATAATCagcgaggagggagagaagacagggaggggaAAGCAAGCGATCTACAGCGtgtttaggagagagagaggctgagtaaAGTTTCTTACCCGGTTACAACATTTTCCTCGCGCACAGCTGTTCCTCAACACCAATACATTCGCGAGCATCGCTAGGAGGAACTCAAGgtgTGGTCATCATGTTGGGGGTGTGTCTGTCCGTCCTATTGCTCCTCCCCCTGGCCTCGTCCATCCCCTCCCCCTCCAAACCTCCCCCAAGACTATGCAGACGATGCTGCGACCCCCTGCAGCCCCCAGAATCCTCTGCTGCACACCCTGCCCACCACGCCGCCGCCACGCCAGAGGTCCACACCTACATCAACATGACCATACTCAAAGGTGATAAAGGTGACAGAGGAGATAAAGGCATGCCAGGGAAAAATGGTAAAGAAGGTCCGCAAGGTTACCGGGGTCCCATGGGTCCTCAAGGGACTAAGGGCCAGGCGGGCGCCCCGGGAGATGCCTGTAAGACACAgcactcctccttctctgtaGGGAGACGTAAATCCCTCCACAGTATAGACTACTACCAGGCCCTGGTGTTTGACACGGTGTTCATCAACCTCTACGAGCACTTCAACATGTTCAAAGGTAAATTCTACTGCTTCGTCCCAGGTATCTACTTCTTCAACGTGAACATCCACACGTGGAACTTCAAGGAGACCTACCTCCACCTGATGCACAACGATAAGGAGCAGGTGATCCTGTACGCCCAGCCCAGTGAGAGGTCCATCATGCAGAGTCAGAGTGTGATGATGGACCTGGCGCTGAACGACGAGGTCTGGGTCAGGCTCtacaagagggagagggagaacgcCGTCTATAGTGATGACGTGGACGTCTATATTACCTTTAATGGATACCTGGTGGCGCCTAGTGTCCAGTGATcagagtggaggaagagggggagggggaggaaactCTGtgttggattttggttgttttatCATGCCTAAAGTTCAGTGATGAAGaaggaggaaagaagagagagagggaacttgCGCCAGTGTTGGATTTTTGATTTTGCTTGTGCCTATATTGCCTTCAGTGCTCACCAAATTCAAATGTAATCTGGTTGGATTTTGGTTGTCCGTTTGCAGTGCCTTCAGTGCTCACCAAATGGACATTTTAGTTGTTCCTTTGTAGTGCCTTCAGTTCTCACCAAATGTAAACTCTGGGTTAATTATGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTGTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTTGGTGCTTTCAGTGCTCACCAAATGGAAACTCTGGGTTGATTTTGATTGTTCCTTTTTGGTGCTTTCAGTGCTCACCAAATGGACACTCTGGGTTGGATTTTGTTTGTACTTCCGTTGCTCCTAAAGCAGCCAATTGATACAAATgatctgcacacacattttcctCTGCCTCACAATGTATTCCTCTCAGGTACTTTGAATGGGGAGGATTGTGGGCAGTGTTGTGCAGTGTTGCAGTGTTGTGTAGTCCCAGTGAGAAAAATTGGTTGAAATTACATAACTTTTTAAGCTTTTCAACGTCTTTTCAATGTCTTTTGCTCTTCGGGTGGTTTTGGGACTAGACTTGAATGGACCCTGCGTTGAACTGTTGCTAAGGTGACCTCGAGGAAAGCTGTAGAAGTGAAAAAGAAGAAAATGGGAGCCATATTAAATGAATATATAGAGATTGTTGAGTAAGTAATGCAAGATTGTATTGATATATATATTGATAACTCAGTGTTACGTGTTTTTATAGAGATTTACTTTAAGCTGCAGAGCAGCTTGTAACATGTACATATTTGTACAGATTTTTGTTACCTAAAACGTTTTATCACTAGTCTGGGTGCCAGTTGGTCTTTGCTTTAGCTGAACTGTTGTTGTTGTCCCGTCCTGAACACAATACGCTACTGTTGCTGAATGCAGTTTGAAAAGTTCTGCATCCAGGCTGGGCTTACCCTAACCCGATACCACCAAAACCTGAAAGTACTGAATTCCATTGTATCaatacaacacatactgtatcagaACAATATAAACCAAACAATCATTTGTAAAAACCCATTCAAACTAGAAGCCCATTCTAAACCAGACCTTCTAGAACCATTACTCCCCGTTGTCAGTTGAGCAGGTTGAACAGATGCATTCTATCTTTCACCTAGAGGTTAAAGGTCAAACCCTGACCCCTGCCTGTTTCCCACCGTTAGAGTACACAACCCCTCATTACTGTCAAGATTTGAATATGTCCTAGTATTGCaatacatggggaatagggtgccaaatgtagtgcactatattgggcaTATAAAGTGTGTGCTAGTATGtcatagtagtgtactatgtagggaatatgggtGCAGTCTGGGATTATCAGTTTTGTTTGACAGCTCCAATGGAAAACCCAACTAAAAGCTAAAGagaggaaaaacaacaacaacatgtgtgGTTTGGATGGTGATGGTTGAATTGGTTGCCAGATGGACGACCATATCTCTCCTATTACTGCTAATTCTGTCCTCAGTCCACAGGGACTGGGGCTAAACTGGAGATAGAGAGACCAACTGGTGTATTAGGCCATGACTAGATAGCGTTGTAGCCAATTAGAATAGGCTTTACTGGTGTAGTTCCCTAGGCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTCATTCCCTAGTCAATAGCTCTGTAGCCAATTAGAATAGGCTTTACTGGTGTAGTTCCCTAGGAGGCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAGTTCCCTAGGCAATAGCTATGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCATAGTCAATAGCCCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCCTAGTCAATAGCTCCGTAGCCAATTAGAAGAGGCTTTAGTGGTGTAATTCCCTAGTCAATAGCTCCGTAGCCAATGTAATAGCGTACCATAGGGATGTACTTCCTATGGCTGTTGTACTGTAAGTACCTATTTCCTGGATATCACTCAAAACCAAGAGCAGAAGTTGACAAAGTTGGTTTGCTGTACCCAGGAGGCAGAACAGCAGAAAGCATTGTGGGTTGGGTTATTAGTATTTACCGTGTGCCCCAAAACACAGCCATTTATAACCTCGCTCAAACAATGGCTCTGTTTCCTACGCACCTCTACAAATGCAGATTGCACTTTCAAGGAGTTCTCTGAGAGTTGTTGGTAGACGGCCTCTTTaaaactagcctggtcccagatcagtttgtgctgtttggcatgacaatgaccattgcgagacagtacaaacagatctggaaccaggctacagTAAAAGTGAAAAGCAGCAGAACTCCTGTTCCTTCCTGGATGCATTTTATTAGTTCTATTAGACGGTTGTGTAGTTCTCTTGTATTTAGCAGCACTTAGAGCCTTTTATACCCTCATTAAAGACATGGACCCAGTTCATAACAGTAACGACTCCATCTGAGGTAAACAGTAAAGTAGCTTTGAATCGCCCCACTATCCTATAAACGCCATGCTCTATAAAATGAGCCATAAAGTAAGTTGTGGTGTTATGTTACCTGTGAAAGAGTGTTGATAAAACTCCTGCAGTTACTGCTGTTAGAGTTCAAGGTTTAGATGGGAGGGCGGCTGGGAGCAGTTggtatgacaggttatgacaggcTATGACAGGTTATGACGTATATATCTCATGCTCATGGCATGTTTACAAGACAGGTTTCTGGAGAAAGGCTCAAGAGGAGAGTTAGTGAGAGTTTTCAATGACATCAATGACGTCCGATTTCCCCCTGCGTCAAAGTCAGCCACAGCTTTCTCTCTAACaccctcgctatctctctctctcttgctctctctcatctctgtctctctctccctctaatgctctactctctctctcttgctctctctctcctctctccctctcttgctcttcctctcgctctctctctcatctttccttctccctctctctccatctctgtctctgtttctccctgaccTCCCTCTTttgctctcatcctctctctctctctctctctctctcatcctctgtccgtctctctctctctctctctctgggctgtttTTCTTTAAGTCAGTAACAGGAAGCTAATGACAACCAGACCTCTGACTGACCGAACTACCctgagagaaggggaaagagggggagaagaaggagacagagagggagaggagaatagTAGAGAGGAAAGGAAAATAGGGAGCGAAAAGGGGtaaaaggagagggaaagaagaaggaggatgagagaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1630528 lncRNA downstream 14689 16806172 ~ 16806542 (-) True G1424249
TU1630512 lncRNA downstream 50223 16770437 ~ 16771008 (-) False G1424234
TU1630511 lncRNA downstream 59062 16761375 ~ 16762169 (-) True G1424233
TU1630464 lncRNA downstream 95580 16725116 ~ 16725651 (-) True G1424204
TU1630455 lncRNA downstream 105322 16715703 ~ 16715909 (-) True G1424196
TU1630498 lncRNA upstream 6511 16843226 ~ 16843685 (-) False G1424224
TU1630499 lncRNA upstream 6511 16843226 ~ 16843765 (-) False G1424224
TU1630500 lncRNA upstream 6654 16843369 ~ 16843685 (-) True G1424224
TU1630503 lncRNA upstream 7346 16844061 ~ 16845516 (-) True G1424226
TU1630496 lncRNA upstream 9217 16845932 ~ 16850533 (-) False G1424223
XR_005036855.1 mRNA downstream 79699 16736497 ~ 16741532 (-) False LOC110494933
XM_036949154.1 mRNA downstream 79699 16736500 ~ 16741532 (-) True LOC110494933
XM_036949139.1 mRNA downstream 89842 16717096 ~ 16731389 (-) True LOC110494948
XM_021570233.2 mRNA downstream 109337 16706615 ~ 16711894 (-) True LOC110494903
XM_036949144.1 mRNA downstream 119403 16697311 ~ 16701828 (-) True LOC110495074
XM_036949156.1 mRNA upstream 23675 16860390 ~ 16933566 (-) True LOC110495067
XM_036949157.1 mRNA upstream 102588 16939303 ~ 16968595 (-) False LOC110494935
XM_036948339.1 mRNA upstream 144018 16980733 ~ 16987774 (-) True LOC110493425
XM_036949159.1 mRNA upstream 252309 17089024 ~ 17108662 (-) False LOC110495066
XM_036949158.1 mRNA upstream 252309 17089024 ~ 17108667 (-) True LOC110495066
TU1630513 other downstream 48274 16770437 ~ 16772957 (-) True G1424234
TU1630335 other downstream 162701 16655268 ~ 16658530 (-) True LOC110508387
TU1630234 other downstream 406372 16412058 ~ 16414859 (-) False G1424038
TU1630255 other downstream 411103 16406731 ~ 16410128 (-) False G1424051
TU1630504 other upstream 14036 16850751 ~ 16851486 (-) True G1424227
TU1630482 other upstream 18762 16855477 ~ 16938699 (-) True G1424218
TU1630535 other upstream 126915 16963630 ~ 16968355 (-) True LOC110494935
TU1630918 other upstream 620214 17456929 ~ 17457504 (-) True G1424547
TU1631836 other upstream 1072350 17909065 ~ 17911376 (-) True G1425321

Expression Profile