RNA id: XM_036949167.1


Basic Information

Item Value
RNA id XM_036949167.1
length 619
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110526382
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 17237261 ~ 17248548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTGCTGTTGCATGAGGCATTGAGTTGCAgttattttctctctgtctgaaaCTCTGACAGACTGTTGCACAGAGAGAAGCGGGAGCTGACTGAAACTAAGCAGGATGCAGGCTATCAAATGTGTTGTTGTGGGAGATGGAGCTGTGGGGAAAACATGTCTTCTCATCAGCTACACAACCAACGCTTTCCCTGGAGAATATATCCCTACtgtCTTTGATAACTACTCAGCCAATGTGATGGTGGACAGTAAGCCAGTCAACCTGGGTCTCTGGGATACAGCAGGACAGGAGGACTATGACAGACTGAGACCACTGTCCTACCCACAGACGgaTGTGTTCCTCATCTGTTTCTCTCTGGTGAGCCCAGCCTCCTACGAGAACGTCAGAGCCAAGtGGTACCCAGAGGTGCGTCACCACTGCCCGTCAACCCCAATCATCCTAGTGGGTACTAAGCTGGATCTGAGGGACGAGAAGGAGACCATCGAGAAGCTCAAAGAGAAGAAACTGGCCCCCATCACCTACCCACAAGGCCTAGCGCTGGCCAAGGATGTTGGTAGactCTGTGAAGTACCTGGAGTGTTCTGCTCTGACCCAGCGTGGCCTGAAGACAGTGTTTGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1630663 lncRNA downstream 100895 17133884 ~ 17137231 (-) True G1424353
TU1630666 lncRNA downstream 105000 17132710 ~ 17133126 (-) True G1424354
TU1630649 lncRNA downstream 105662 17131319 ~ 17132464 (-) True G1424342
TU1630659 lncRNA downstream 115627 17121987 ~ 17122499 (-) True G1424351
TU1630641 lncRNA downstream 153766 17082021 ~ 17084360 (-) True G1424337
TU1630828 lncRNA upstream 2271 17250819 ~ 17254840 (-) True G1424474
TU1630830 lncRNA upstream 10794 17259342 ~ 17268396 (-) True G1424475
TU1630832 lncRNA upstream 22309 17270857 ~ 17276918 (-) False G1424476
TU1630833 lncRNA upstream 24321 17272869 ~ 17274225 (-) True G1424476
TU1630912 lncRNA upstream 197016 17445564 ~ 17446514 (-) True G1424541
XM_036948342.1 mRNA downstream 91197 17142063 ~ 17146929 (-) True LOC110495065
XM_036949158.1 mRNA downstream 129459 17089024 ~ 17108667 (-) True LOC110495066
XM_036949159.1 mRNA downstream 129464 17089024 ~ 17108662 (-) False LOC110495066
XM_036948339.1 mRNA downstream 250352 16980733 ~ 16987774 (-) True LOC110493425
XM_036949157.1 mRNA downstream 269531 16939303 ~ 16968595 (-) False LOC110494935
XM_036949169.1 mRNA upstream 31310 17279858 ~ 17296635 (-) True LOC118940342
XM_036949170.1 mRNA upstream 48325 17296873 ~ 17301197 (-) True LOC110526262
XM_036949173.1 mRNA upstream 474730 17723278 ~ 17727642 (-) True LOC118940344
XM_036949177.1 mRNA upstream 671673 17920221 ~ 17929855 (-) True LOC118940345
XM_036949178.1 mRNA upstream 970811 18219359 ~ 18239809 (-) False LOC118940346
TU1630535 other downstream 269771 16963630 ~ 16968355 (-) True LOC110494935
TU1630482 other downstream 299427 16855477 ~ 16938699 (-) True G1424218
TU1630504 other downstream 386640 16850751 ~ 16851486 (-) True G1424227
TU1630513 other downstream 465169 16770437 ~ 16772957 (-) True G1424234
TU1630335 other downstream 579596 16655268 ~ 16658530 (-) True LOC110508387
TU1630918 other upstream 208381 17456929 ~ 17457504 (-) True G1424547
TU1631836 other upstream 660517 17909065 ~ 17911376 (-) True G1425321
TU1631959 other upstream 1071383 18319931 ~ 18326899 (-) True G1425419
TU1631960 other upstream 1111045 18359593 ~ 18363136 (-) False LOC110487190
TU1631963 other upstream 1111045 18359593 ~ 18363136 (-) False LOC110487190

Expression Profile