RNA id: XM_036949221.1


Basic Information

Item Value
RNA id XM_036949221.1
length 1933
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110485553
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19029078 ~ 19032742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTATTGTAGTCTAACTACACCACCAGTACACCAGACGCAATTGTCTTCGTAACAAACTCCTACACAAAGGGCAAAGCAAACCGTGGTCATGCAATATAGCCTACtcttggtgctttcaagacatctGATAACATGACCCTGCTGCAACAGCCCAGCTCTGATGCAATCCTGTACAGCCCTTTCTGGAAGGCTGTATAGAAGACCCTGTTTTCTATTCATCCTGGTGGCAGTGGCTGTCTCCGTGACCTACACCACCTTCGCCTtgaattggtggaatgacccaCAGCGACCCTCGGTAATCAGTCACACTGGAAAGACTCCTGATGATGACAGGACCAATCACACTGGAAAGATTGCTGATGATGATCAGGTGAACCCGCGTGTCTTGACCAATCGGAATGGTGTCCAATGGGAGGATCCCGGGCGGTACCACGTGGCATACCCGCGGGGATACAAATTCATAATGGATGAGCCGGAGAAGTGTCGGACCGGGAATCAGGCCCCGTTCCTGGTGCTGATGGCCCCCGTGGCGCCTGGTAACCTGGCCTCCCGGGACGCCATCCGCAGGACGTGGGGTAATGAGACCCTGGTGCATGGGAAGAAGGTACAAACGCTATTCATGTTAGGACTTCCTGGAGGACCAGGTGCCCAGGAGCTGCAGGAGAAGGTGAACCAGGAGAGCCGGGTGCACCACGACCTCCTCCAGAGCAACTTCAAGGACACCTACCATAACCTGACCATCAAGACCATGGTGATCCTCGAGTGGCTCGTCTCGCGGTGCCCTGAGGCCTCCTACGCCATGAAGATTGACTCAGACGTGTTCCTCAACGTCCAGAACCTTGTCTCCATGCTGGTCAACCCTGACACTCCCAAACAGAACTACATGACCGGTCTAGTCTGGTGGCACAGCCCGGTGCTGAGAAACCCCAACAACAAGTTCTTCCTGCCTTATGAGGTGATGGCTGAGTCGGAGTATCCTCCGTACCCTCTGGGGTTTGGCTACATCATGTCCATGGACCTCCCCAAGAAGATCATGGGGGTCACTCCACAGATCAAGCCCATCTACATCGAGGATGCCTACCTGGGGATGTGTCTGAAGCGACTGGGCATCTCCCCCACCAATCCTCCCAGCAAGTCACTCTTTGACGTCAACCCCATCTACAGCTACGGACGCTGCAAACTGTCCACCGTGGTTGCCGTGACGACGACCAAAGTGAGCCAGCTGCTGAGGTACTGGCAGGACTACACAAGGCCCGGCCCGCCGTGCTGAGAGGGTAATCACCACAGCAAACATTGCTTCTTCCTGTTTGGAAAACGGAATTCATGAAGACACTTCCTGTATGTTTCCCTTCCTGGAAATGTTGAATTGGAACTTTGGGTAAGAGACATTGGCTCTTGCATAAGAGACATCCGTTCACTCTTGTTGGGAGATCCATAGGTTGTTTGGTATTTTGCTAATGTATACCTCAACCCTTCCCTTTACATTGACTGTGGTGCAGTGAAGGTGGATAGGTGTTGGAGATGGCTTATTGGGCCTGTCTCAATACCTTTCAACTGTCACATGCTGCAACAAAAAGATCCCAAGCTGCATATTTGTATCATACAAAGAGAGCCTTAAGACTGGATCCTATCAGATCTGCCCTAGCCGACACCCGCATAGTGGTTGTATTGGTGGTGTCGGAGGTGGcactgtcaaatccacaagcggctccCGGCACTATACCTAaagtggacattgccattggctgacatatattgtgttattttatggttTACAtcaacctaccacacaaggcaataGCCTacgtgtcaacagtatgtttatgttataTAGTATTGTTGAGAAAtttggggttacttagaaatgtccttgttttgggGTGAAAAAcactttttgtccattaaaataacatcaaaatgatcagaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1632412 lncRNA downstream 22378 19006375 ~ 19006700 (-) True G1425815
TU1632397 lncRNA downstream 36704 18991967 ~ 18992374 (-) True G1425804
TU1632395 lncRNA downstream 44337 18983737 ~ 18984741 (-) True G1425802
TU1632394 lncRNA downstream 46407 18982415 ~ 18982671 (-) True G1425801
TU1632341 lncRNA downstream 154790 18873909 ~ 18874288 (-) True G1425757
TU1632441 lncRNA upstream 40712 19072741 ~ 19073367 (-) True G1425839
TU1632443 lncRNA upstream 42869 19074898 ~ 19075236 (-) True G1425841
TU1632444 lncRNA upstream 45672 19077701 ~ 19078271 (-) True G1425842
TU1632445 lncRNA upstream 47117 19079146 ~ 19079442 (-) True G1425843
TU1632446 lncRNA upstream 47919 19079948 ~ 19080199 (-) True G1425844
XM_036949219.1 mRNA downstream 48184 18949455 ~ 18980894 (-) True LOC110514184
XM_036949208.1 mRNA downstream 307161 18720958 ~ 18721917 (-) True LOC118940349
XM_036949209.1 mRNA downstream 312617 18713229 ~ 18716461 (-) False LOC110485574
XM_036949204.1 mRNA downstream 321952 18564334 ~ 18707126 (-) True LOC118940348
XM_036948345.1 mRNA downstream 534958 18361725 ~ 18494120 (-) False LOC110487190
XM_036949220.1 mRNA upstream 3796 19035825 ~ 19050381 (-) True LOC118940350
XM_036949222.1 mRNA upstream 18696 19050725 ~ 19093965 (-) False LOC110485549
XM_036949223.1 mRNA upstream 18696 19050725 ~ 19093965 (-) False LOC110485549
XM_036949231.1 mRNA upstream 295643 19327672 ~ 19333234 (-) True LOC110485538
XM_021556626.2 mRNA upstream 302303 19334332 ~ 19342508 (-) True LOC110485530
TU1632337 other downstream 162146 18866190 ~ 18866932 (-) True G1425753
TU1632273 other downstream 312694 18713229 ~ 18716384 (-) True LOC110485574
TU1632214 other downstream 402037 18625756 ~ 18627041 (-) True G1425652
TU1631967 other downstream 655376 18369450 ~ 18373702 (-) True LOC110487190
TU1631963 other downstream 665942 18359593 ~ 18363136 (-) False LOC110487190
TU1632428 other upstream 21845 19053874 ~ 19061393 (-) True LOC110485549
TU1632630 other upstream 137351 19169380 ~ 19172677 (-) True G1425986
TU1633244 other upstream 767680 19799709 ~ 19803564 (-) False G1426504
TU1633235 other upstream 769799 19801828 ~ 19803564 (-) False G1426504
TU1633241 other upstream 769799 19801828 ~ 19803564 (-) False G1426504

Expression Profile