RNA id: TU1632771


Basic Information

Item Value
RNA id TU1632771
length 3613
lncRNA type sense_over
GC content 0.42
exon number 4
gene id cxcl12b
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 19419049 ~ 19432304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACAGTCAGTCTACACTGAGCCCTGCTGGATAGTAGCTGTGAGAAGCTGAGCCCTGAGCCTCTTGTAACTCCATCCTACTACATACAGCCCACCATGGATGTCAAAGTACTGGCTGTGTTGGCCCTACTGGCTGTGGCCATGGATGTACCTCCCTCTACGGCTAAGCCCATCAGCCTGGTAGAGAGGTGCTGGTGTCGCTCCACTCTGAACACCGTCCCTCAGAGGAGCATCAGAGAGCTCAAGTTCCTTCACACACCCAACTGccctttccaagtcatTGCCAAGCTGAAGAACAACAGGGAGGTGTGCATTAACCCCGAGACCAAATGGCTGCAGACGTACCTGAAGAATGCCATTAACAAgGTGAAGAAGTCCAGAAGACGTGCTCAGTAAAGGAGACACCATCCTGACCGGCTTGCAGTGCCCCAGTCCCAGGCCagctctcctcctccactactcAGATATGTAACTCTATAGCTACACGTCTCTGCTCTGGAACACTCTGGAACGCTCTGGAACATTCTGGAACGCTTGCAAAACCAGCACTTCACCGCCAGACCGACCATGATgccttgctgctgctgctgtccccCCGCAGCCACCCTGCCCCCCACGCTGCAGATACCTCTCCTCACGCTGTTAGCACCAAGTGCATATACCTAATTATATCGGAATGTGTGAGTACGTGTGTAAAGAGTGTGTGAGCACAGTGTGTTTTATTTGGTGTGGTtgttcttagtgtgtgtgtgtgtgtgtgtgtgtctgaactgAGTGTGTCTGAACTGAGTGTGTAAGTGTACGTCTGTATATAAAGTATTTTTCCTACTTTTATAAGAGGCAGTAAAGGGACATTTAAAGTTTTTACACCCGGTTCACCGTCTCAAATGTGCTCAGCAAGGGCTTGTGGGTATCACCAGGGGTGGGCTCTGACTGAGGGGTCATAGGATAGGAACAGGAATGAGCCGTCCAATGGCTTGAGCCCACTCTGTAAGAGGCGACCAATCAGGGCTGGTCAAACATTCATAACAGGGGAAATAGATAGTCACCCTTAACTGATCCAAGGTCAGATGTTGTTGAATCCCTGATGGTTAAGTCTAGGATGGTAGGGAAGGAAATcttagatctgtggttaggggcaACTTCTGTGTCAAGCCTTAACAAGCATTCCAGTCTAGCCAAGACAATGGAGATCCTCAAACGATAACAAAGGACATGCATTGATTCAGGTGTTTCAACTCTGGGGATCAGAAGACATTAGTTTGAACTGATACATAACTTTTCAGGAAGCGAGGCTGTGCACTGAATCACATGGAGTTTCCATTCACCAGAACAGACCAGTGAAGATCCGAATCAGACGATGCGTACAGGCCGGCGGTTTCTAACCTCCCCTCGGGGACCACCAGGCGTTTCACAATTTAGTTGTAGCCCAGAACtaactcacctgattcacctaTTCAAGGCTggttagttgacaagttgaatcaggtgtgctagctgtGGAATAGATCAAATACATGGAACGACTGGGGGACCtcgaggagaggtttgaaaaccCCTGCTGTAATGAAGGGGAAGTTATCTGCTGTAATAAAGGGGAGGTTATCTGCTGTAATACAAGCCGACAGCCTTTATTGGAGGCAGACAATTCTGTATTACAGTTGAGTCCTGTGCCGAACAGGAAAGCCCACACAATTAGAAGTAACTTAAGCAACTCAGCAAAAGCCAAGGGTTGTAAGAACGATGGCCTTGTAGGATAAGATTGTAATGCAAAACAGGGATAAAACTCCATATCAATGCAGCTTTTTATACAGTTTGTGTGAATGTAATGTTGTTTGTTGCTATAGTCTAGGCTGTAAAGGCATTGAATGAGACACCAAGTCATTTTTCAACAACACAAGCGATGTGAAATTAATTCACCTCAATATTCTGGGTATTTACTAACAAATACTGGCGTAAAATAATTGCTGTATTATATTAAGTATAGTAAGATTCATTACATACATTTCGATACAGGATCACATTGTCGGATTATTGGATTTCACTCATCAATTGCATAGGAGCTCACTTTAGGCCTACTCCATAGTTATAAAccaccacatatcctgaggattTAAAGCCAGTATACGGCCACATGAAATACctgttactatactacagtatTGACTATCACATTGAAACTGAATGTTGCTGAGCTGGGGGCGAAATAAAGTTATTCTACTTTGATCGTTGAGCCACTTTAAGACTTTAAGTCTTTTAAATTGGTATTTTTACTGTAATGATTTTTATATGtttgtatattttatatattctaAGATAATGAGATGTAACACAGTATTTGTAAGTACATTTAAGCAGTATTAGATGAAGGCATAACCAGAGAGTACTGTATCCCAACCGCAGTACTACTGTATTATCCAATCAAATTTTTACACATTTATCACTTTTCCAAAAACGTTTATTTGCCAtatcataaaaaaacatgttatGTGTCTATTAACTTCATTTGGTGCAGCTGCAACATGTTGAAGTTAATGTAATGAACATTTATAGTCCCCCAGATTAAATTGTGGCGACAGGTCTAGATTGAACAACAACAGAATATTATAGAGATACAGGGTTCATTGCCATAGTTTTCCCTGATTCACTCCTCCCTTGAGGAGGTTTATTCTAATCAACCAATAATCTGACGGCATTCATCCACTGATGCAAGATGGGCAAATCTAATAAATCTGGAATGTAACGCTACGTACTGAGATACTTTAAAACAAACATTCCTGTTGTCATTAGGATATCTCAGCTCAGGCCGATTCAAATTCAGATTCAGCTCAGGCAGACGTCAATTAATTCTTCATTAGGACCCCTTAGAACACAATGTCGTTGGGATTCTGTTCTATTTCTCCTGACAGCGTTCCACAGAGTTTAAAATATGAAGTGCCAATAGTACCACTGAGCCAAGACAGAGAACAATGCATTTAAGTATGAGCCAGGGGACCCACACATGTTTTCAATCAAGCCCCTCCCTCCCAGATATAGCCATTCCTCAATGATGTGGGtttctatactgttttactgttgCCATTGTTTTTCTACTGTCAAAATAGAGCTCCAGGTCCATTCAAATCTCCAGGCATCTTAGTCTGTGAGCTAAGTGCAGGTGTTTTGGTCCAGAGGTTATTAAGTATCTGTATCACATCGTTGTAAGGTTTGTCATAAAGGAAGGGAATTTGGTGATTATTTAAGTGTTTGAGAACCATTCTGTTCAATGCCATGCTACAGTTAGATCCACAACCAAACCAAACAACATGGCTGTTACCATTTTACTTATCATATCTGTTATTTGGACCACATGTGCAAATAAATCATTGCATTAAGCAATAACATCCCAAGTGGAAATGTGTTTTGTCAGAAGTGTATTTGTTCTGTATGGGTGCTCTCCCCAGACAATGTGAATAAAATGTTAAAACCTTCAATTCTTTTGAGGCAGCTTACGACACAAGTATCCTTCATCTACGAGGGATTGTTTAATTCAACTTTGTATGTTCACTGTTTGTATAAACCAAGGGGCAATATGATAACTATATGATACTCACCCTCTTTTTCAATAaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1632776 lncRNA downstream 12280 19401670 ~ 19406769 (-) True G1426115
TU1632752 lncRNA downstream 56796 19361714 ~ 19362253 (-) True G1426093
TU1632740 lncRNA downstream 74997 19343835 ~ 19344052 (-) True LOC110485544
TU1632739 lncRNA downstream 78660 19339995 ~ 19340389 (-) True G1426083
TU1632720 lncRNA downstream 81841 19336429 ~ 19337208 (-) True G1426067
TU1632791 lncRNA upstream 22544 19454848 ~ 19455061 (-) True G1426130
TU1632793 lncRNA upstream 29656 19461960 ~ 19462243 (-) True G1426132
TU1632842 lncRNA upstream 79826 19512130 ~ 19512332 (-) True G1426178
TU1632847 lncRNA upstream 85720 19518024 ~ 19518234 (-) True G1426183
TU1633126 lncRNA upstream 136247 19568551 ~ 19568822 (-) True G1426417
XM_036949230.1 mRNA downstream 68260 19343599 ~ 19350789 (-) False LOC110485544
XM_036949229.1 mRNA downstream 68262 19343599 ~ 19350787 (-) False LOC110485544
XM_021556626.2 mRNA downstream 76541 19334332 ~ 19342508 (-) True LOC110485530
XM_036949231.1 mRNA downstream 85815 19327672 ~ 19333234 (-) True LOC110485538
XM_036949223.1 mRNA downstream 325084 19050725 ~ 19093965 (-) False LOC110485549
XM_021556628.2 mRNA upstream 67920 19500224 ~ 19501417 (-) True LOC110485531
XM_036949233.1 mRNA upstream 92533 19524837 ~ 19538583 (-) False LOC110485541
XM_036949234.1 mRNA upstream 92533 19524837 ~ 19539688 (-) True LOC110485541
XM_036949235.1 mRNA upstream 108550 19540854 ~ 19567888 (-) False LOC110487230
XM_036949236.1 mRNA upstream 108550 19540854 ~ 19581027 (-) True LOC110487230
TU1632630 other downstream 246372 19169380 ~ 19172677 (-) True G1425986
TU1632428 other downstream 357656 19053874 ~ 19061393 (-) True LOC110485549
TU1632337 other downstream 552117 18866190 ~ 18866932 (-) True G1425753
TU1632273 other downstream 702665 18713229 ~ 18716384 (-) True LOC110485574
TU1632214 other downstream 792008 18625756 ~ 18627041 (-) True G1425652
TU1633244 other upstream 367405 19799709 ~ 19803564 (-) False G1426504
TU1633235 other upstream 369524 19801828 ~ 19803564 (-) False G1426504
TU1633241 other upstream 369524 19801828 ~ 19803564 (-) False G1426504
TU1633291 other upstream 427997 19860301 ~ 19861663 (-) True G1426547
TU1633329 other upstream 587325 20019629 ~ 20021058 (-) False LOC110485621

Expression Profile