RNA id: XM_036949576.1


Basic Information

Item Value
RNA id XM_036949576.1
length 5771
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110493615
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28077558 ~ 28094823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCACCCTGCCTACCTGGACTGGAGAATGTGTGTGACAGTTTGTGGCTGGGAAGGGATGCCGAAGATGGAACCAGTTTGTCTGCTTTGGGGAGGGTATGTTTTCGCCGACTGAGGCACGGGGAAGGTATGCTGAAGCTGGAACCAGTTTTTCTGCTTTGGGGAGGGTATGCTTTCACTGAGTGAGGGAGGCACAGGGTAGGCACTCCTACAGGAGTACGGAACACCATGGACTGCTAACACTCAACTTTCTCACATCAGTGGTAAAACTCCTAGGGGGTGAGTAACTACAAACTGCATGGTCAAAACAACCCAATGGAGCCTAAGGTTTAGACAGAAGAGCTTTTCATAAAGGATCATGGCAGGTGTCCGCAGCGGGAGGAGGCCCTCTGGGGGGCTGATGCTGGAGGAATCAGAGAAAGGACGATTGGTCGTCTCCAGTGTTGTCGATGGCTCCTTGGCCAATCAGGGGCTCAAGGAAGGAGATGAAATTGTGGGTGCCACGATCAACTTTGACCAACTTTCAAAAGACGATGTGTTGAAAATACTGAAGCTGATGGATGATAATGGATTTGATGAGAAGGTTCAAGTTCTGACAAAAAATAATTTGCGCAAGAGTATGGGGACCTTGGACAGCATCAAAGCACCAGAGGAGATGCTGAAGGATTCCTATAACAGACTCAatgccaaaataaagaaaataagttCATGAAAGAGGACAGCTCTGGACAACCTACTGGACAACCTTTCCCCTAGCTTCTGGGGAAAGAGGCTCTCCTAACGGACAGGTGAAAGGCAAGGAACCGAGACCTCTCTGGGCCAAGCCTAATGTCAGAGGAACAGACTCTACAGTGACTCTCGATGCTCCTGGTGGAGAACTTTCATTGCCTAATGCCAACATGAGTACATCAGATCTCTCTCTAGCTCATTTGAATGGGTCTTTAGGGGCTGATCCTGATGTCAATATCTCAGATTTACCTTCAGTAGACCTTAAAGGTTCCAAAATAGATCTAGAATTGCCAGATTCAGACATTGGTATCCCATCTGGGAAGATCAAAACACCAAGTCTTGGAATGGCTGACTTTGCTATATCTGGACCAAGAGTTAGGAATCCAGACCTGGACCTCTCAGCggttgagatgtgtctatcaGACGTCAGTTTGCCTGACCTCAGTACTCCAGATATTGATATACCCTCAGGTAAATTCAAACTAAAGAAACCACATGCAGAACTCAAAGCTCCTGATTTCGATGTGGATGCCCCCTCTGGTAAACTGAAGATGCCCAAATTTGACGTCTCTGGCCTAAAAAGAACAGATCTGGgaattgatgatgatgatgtaaaaacaacaaaaataattctCAAAGCTCCCAAGATAAAAGGCGGACTTGATGCACCTGACTTGGACTTACCCAAAGTCGACCTAAAATCACCTAAATTAGATGTCAACACTCCAGATATTGACATAAACGCACCCTCAGAAAAATTCTAAATGCCAAAGTTTAAGATGCCTATATCCAGCCTTTCGGGCCCTAAAGGACCAAATGTTGGCATTGATAGAGACTTGGATGGACCAGATCTGAGCTTATTATCTTCCAAATTAAAACGGCCAGACTTGGATGTTGGTAGCCCATCTGGAAAATTAAAGATACCAAGTCTAAAGGTGCCAGACTTTGGCTTCTCGGGGCCAGATGTTCAAGGGCCCGACTTAGAGGTAAAGACTTCAGACTTGGATCTTTCCGCCCCCAAGTTTAAAGGGGGAATTAGTCCCCCAGATTTAGATCTGCCAGATGTAGACCTCAAAGGCCCCAAATTAGACCTCAATGCTCCAGATTTTGACATAGATATGCCCTCAGGTAAAGTCAAAGTACCTACATTGAATAAACCAAAGGTTGATCTGAATGCTTCTGATCTGGACATCGATGGGCCCTCTGGTAAACTGAAAATGCCCAAATTCAATCTCTTTGGCACATTGCCAAAAGGACGAGGTCTAGACATAAATGCAGGTGTGAAATCACCAAAGTTAAAAGGTGGGATTGATGCCCCTGACATGGATTTACCAGACATTGACCTCAAAGCCCCTAAATTAGATGTAAACACTCCAGATGTTGACATTGATTCACCCACAGGGAAATTCAAAATGCCCAAAATGAAGATGCCTACATTTGTCACGAAAAGACCTGATGTTGACAAAGATGGAGATCTAGAGGGGCCAGGCCTGAACTTGTCTGCGCCAAAATTGGACATAGAAGCACCCTCAATGAATCTCAAAGGTCCCAAAGCAGACCTAAACATTCCAAATGCTGATTTGGGAAGTCCATCAGGGAATTTCAAAATTCCAAGTTTCAAGATGCCAGATTCAGGTTTCTCTGGACCAAAGGTTAAAGTGCATGACTTTGAGGTAAAGACTCCAGGCTTAGATCTTTCAGCCCCCAAGTTTAAAGGAGTAATTAGTCCCCCAGATCTGAATCTGACAGATCTCAAAGGCCCCAAACTAGACCTCAATGCACCAGATGTAAACTTTAATGTGCCCTCAGGTAAAGTCAAAGTACCTACATTGAAGAAACCAAAGGTTGATCTGAATGCTCCTGATCTGGACATTAACGGCCCCTCTGGTAAACTGAAAATGCCCAGATTTGGGCTGTCTGGTAAAATGCCAAAATCCACAAAACTGAATCTCAAATCCCCAACGATAAAAGGGGGAATtgattccccagacctgaatttTCCAGATGCTGATCTAAAAGCCCCTGAACTAGATGTGAATACCCCGGATCTTGACATCAGTGCACCCTCTGGTAAATTCAAAATGCCCAAATTCAAAATGTCTAAATTCAGAGGCCTAAAGGGACCAGATGTTGACATTGATGGAAACTTGGAGGGCCCAGATATTGATATCAATACCCCCACAGCTAACCTCAAAGGTCCCAAAACAGGTCTAAAAATGCCAGATTTGAAGATGCCTGGTTTCGGGCTATCTGGGCCAAATGTAGACAAACCTGACTATGACTTACCTGATATTGACCTCTCAGCCCCAAAGCTAAAAGGGGGCATCAATCTCCCAGATTTGAGACTACCTAAGGGTCATCTCAAAGGGCCCAAACTAGATCTCAATGCTCAAGACTTTGATGTTGACACTCCCTCTAGTAAACTGAAAATGCCCAAATTTGGGCATTCAGGTACTATGCCAAAAGGACCAAATATTAAAGGTGGGATTGATGCCCCTGATATGGATCTACCAGACATGGACCTCAAAGCCCCTAAATTAGATGTAAACACTCCAGATATTGACATTGATTCACCCACAGGGAAATTCAAAATGCCCAATCTGAATATGCCTAAATTTGGAATGAATGGGCCAAGTATTGACATAGATGGGGATATAGAGGGACCAGACCTGAATTTGTCATCTCCCAAACTCAAGGGGCCCAAAGCAGACCTAAACCTTCCAGATGCTGATATTGACAGTCCACCAGGAAAATTCAAAATGCCTACTTTCAAGACACCAGATTTAGGTTTCTCTGGAACAAAAGTTAAGGGGCCTGACTTGGACCTTTCAGCCCTCAATTTTAAATGGGGAATTAGTCCCCCAGATTTGGATCTGCCAGATGGAGACCTCAAAGGCCCAAAACTAGACATCAATGCACCAGATGTAAACTTTAATATGCCTTCTGGTAAAGTCAAAGTACCTACATTGAAGAAACCAAAGGTTGATCTTAATGCTCCTGATCTGGACATCGATGGGCTCTCTGGTAAACTGAAAAAGCCCACATTCTTGCTGTCTGGTACAATGTCAAAATCCCCAGACTTGAGGCTCAAAGCTTCAAACATTAAGCGGGGAattgatgttccaaacattaaTTTACCAGATGCTGACCTCAAAGCCCCTGAACTAGATGTGAATGCCCCAGATCTTGACAGCAATGAACCCTCTGGGAAATtaaaaatgcccaaatataaAATGCTTAAATTTAGAGACCTAAAGAGACCAGATGTTGACATAGATGGAGACTTAGAGGGCCCAGATATTGATATCAATGCCCCCACAGCTAACCTCAAAGATCCCAAAACAGGTCTAAAAATGCAAGATTTGAAGATGCCTGATTTTGGGCTATCTGGGCCAAATGTAGATGAACCTGGCTATGACTTCCCTGATATTGACCTTTCAGCCCCAAAGCTAAAAGGGGGAATCAGTCCCCCAGATTTGAGACTATAGTAAGAGTCATCACAAAAGCCCAAAACTAGACCTCAATGTTCCAGATATGCCCTCAGGTAGATTCAGTGTTCCAACCATAGAGAGGCCAAGTGATAGCATCAAAGCCTCTGATTTTGACATCAACACTCCTACATTCAAAATGCCTATGCCTTGGTTGTCTACACCAAAAGGACCAGATCATGACATCAGTGCTGACCTAGGTTAAATTGTCAAAGATGAAGGTTGGATTGGTTCACCAGATCTGGACCTACCTGCAAATGACTTAAAAGCCCCTAACATAGATTTAGACACTCCAGATATAAACATTGATTCACCATCTTGGAAATTCAAAATGCCTCACCTCAAAATGCCTAAATTCAGCCTTTCTGGTCTGAAAGGTCTAGATGCTGGAATAGATGGAGACATTGAGGGACTGGACCTGAGCTTGTCAACCCTGAAAGTAAACATGAGGATTGGTAGTCCAGATTTAGACATAAATGTTCGTCATTAAAATTGCCTCAGTTTGGAAGTCGCAATTGAAGGGCAGTATCAGATATGGACTTTATGAAAACAAGTTACATTTCTCCTCCAAAGGCTATAGTGAATCTAAAAGCACCAGACTTGAAAGTTAGTCACCCAGATGTCAGCCTGAGCATACCCAAAGCTGATACCAGAAGCCCAGAATACAAAGTGACATCTCATAGTAAACGCAAATCTGATATCCCAGGTGGAACGCATATAAAATATTTGATATGCCAGGTGGAGTACATATACATGTGCCTGTTGGGAAGTCTAGGAAGGTCAAAGGAAGAGCTAGTTATCCCATTGCAGATATTGATTTGCCAAAAGTTGATTACCAAGTGTCTGGTGTATCTGAGAGGTTCAGACCTTAACCTTgatgacctcacagtgaaattctAAATTCCCAAACACAAGACTTCTAAACTGGGTAGTTATACAAGAATACCAGATATAGACTCAAGTTTTCCCAGTATTAATGCCTCAGTCCCTAAACTCCCACCCCAAAGTGTGGATTAGTGGTTTCACAGCCATATTTTAATTAGAGAAGAACTGACCTCAAGGGCAATAAACATCATAGGAAAGCACCAGCTGGTGAAACCGACAGATAAAAAAAAGTCCAAAACAGTCTAAAATTGTTATGTCCATGACAAATTTGACTCATGGTTCAAACCCCAAAATTTCTGAAGATCAATAATATTTGATCACTGCAAAGTATTTCCCATACATGTCAAAGATGATGTACCAAACGGAACTGGGAGCCTGAAAAATCGGCACAAGGAAGAGTCAAACCGTAGATCTCATACACTCAGAAGTCTCGACTTCAGTTCATCAAATGTGGACCTTAAAGTTCCAGAAGCTGAGAACTTAAAAAGGGTCAAAACTTACAAAGCTTACATAGCATTCAGATAACTGACTAAGTGTAATTTTAGGCTTGTTTTAATCACAATCTTCTGTTGAAACATAATGCAGAAAACTTATGTTACTTGAACTTAGTTGTACTTTTTATGTAAATTGATTGGTATTTGTTATGAATGTTAAAATTAAATGTGTAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643131 lncRNA downstream 5817 28071472 ~ 28071741 (-) True G1435189
TU1643093 lncRNA downstream 29557 28044275 ~ 28048001 (-) True LOC110495123
TU1643089 lncRNA downstream 85227 27988179 ~ 27992331 (-) True G1435149
TU1643077 lncRNA downstream 90765 27978615 ~ 27986793 (-) True G1435140
TU1643070 lncRNA downstream 115938 27961402 ~ 27961620 (-) True LOC110493601
TU1643150 lncRNA upstream 51877 28146700 ~ 28148447 (-) True LOC110493609
TU1643215 lncRNA upstream 130187 28225010 ~ 28227736 (-) True G1435270
TU1643234 lncRNA upstream 155138 28249961 ~ 28250179 (-) True G1435289
TU1643235 lncRNA upstream 156495 28251318 ~ 28251681 (-) False G1435290
TU1643236 lncRNA upstream 156575 28251398 ~ 28251681 (-) True G1435290
XM_036948363.1 mRNA downstream 10850 28052876 ~ 28066708 (-) True LOC110493602
XM_036949568.1 mRNA downstream 24613 28048432 ~ 28052945 (-) True LOC118940388
XM_036949569.1 mRNA downstream 29532 28043251 ~ 28048026 (-) False LOC110495123
XM_036949573.1 mRNA downstream 29553 28043251 ~ 28048005 (-) False LOC110495123
XM_036949577.1 mRNA upstream 435 28095258 ~ 28118382 (-) False LOC110493604
XM_021567965.2 mRNA upstream 435 28095258 ~ 28119296 (-) False LOC110493604
XR_002469176.2 mRNA upstream 435 28095258 ~ 28119296 (-) True LOC110493604
XM_021567973.2 mRNA upstream 36203 28131026 ~ 28147717 (-) False LOC110493609
XM_021567976.2 mRNA upstream 36203 28131026 ~ 28148402 (-) False LOC110493609
TU1643092 other downstream 29557 28044275 ~ 28048001 (-) False LOC110495123
TU1643000 other downstream 146536 27929157 ~ 27931022 (-) False LOC110493598
TU1643001 other downstream 146536 27929212 ~ 27931022 (-) False LOC110493598
TU1642248 other downstream 523115 27553723 ~ 27554443 (-) True G1434481
TU1642066 other downstream 848367 27192987 ~ 27229191 (-) True rhbdl3
TU1643202 other upstream 86219 28181042 ~ 28182561 (-) True G1435257
TU1643142 other upstream 94196 28189019 ~ 28200682 (-) True G1435199
TU1643279 other upstream 233307 28328130 ~ 28328877 (-) True LOC110493621
TU1643280 other upstream 271631 28366454 ~ 28367241 (-) True LOC110495156
TU1643452 other upstream 452450 28547273 ~ 28547556 (-) True G1435467

Expression Profile