RNA id: XM_021567973.2


Basic Information

Item Value
RNA id XM_021567973.2
length 4465
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110493609
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28131026 ~ 28148483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTCACTGTACACAAGTCGTAGCCCTCTACTGTGCCCATTTGCTAGCTATtatactgtacttttgtttagGGCCTTTTAATTTTGTACTTCGTAGACGAGGAGTTGTAGTTGGCAATGCATGTGTCTGACAATCTTTTTTTTGTCATAGACCCGCCCTTTTATTAAGGATTAAAGGTCACGCAATTTACACACATCTGCGGTGACTGGCATTCACGGGGTGGTAGCTAGCCATCCACAACTCATCTATTGGAGTTGCAGTTCCCATTTCCTTTGTGAACTGTCTTATTTGAATGCCTTTACATGCGTTTAGGGCAAAACCGCTCCCTCGGATTGAATAATTTCCTGaatctctgcagcagagATCAACAGGACAGTATGGCCACCACTGTTGCTGTCAGTCCCAGCGAGTATCTCCAGCCCTCTGCCACTTCCTCTCAAGACTCCCAGCCCTCCCCACTGGCCCTCCTGGCCGCCACCTGTAGTAAGATCGGCCCCCCTGCTGCTCAGGCCCCTGTCAGTGCCCCTCCTACCCAACCCCAACCTCGCCGTCTCCTCCCCATCAAGCCCGCCCCCATCGCCCCCGCCCCTCCCAAAAACCTGGGCTTCCTGTCCGCTAAAGGAAATGTGATCCAGCTGCCAGCGGGCCTGGGCTCCAACAACCCCGGCACCCCCATCGTCCTCACCATCCAGCAGAGCCCTGGCCGCTCGAATCAAACATCCAACATCCAGTACCAAGTGATGCCGCAGCTGGGAGGCACACAGACCATCCAGATGATGCAGCAGGGCGGACAGATCCAGCTCATCCCGGGTACCAACCAGGCCATCATCACCACGCCCATGACGGTCCCCCAGCCGCAGCCCGCTGCCGCGCCCATCACCCCGCAGAAGACGGTGGCCATCAAGCCGTCCCCCAGGGGGCGGAAACCCAATGCAGCCAACGTGGTGCGGCTGCCCAGCGGGCTCACGCTGCCCCTCAACGTAGCCACCGGAGATGAGCCAGCGGCAGCTCCTCCCCTGCCAACAAAGGGCAGACGAGGAAGGAAGAAGCTGGTGGCAGCAGCCCCTCCACCACAGACCACCTCTCCGCCCCCCGAGCAGATGGAGACTATATTGTTAGAAGCCGGGGAGAATATTATTCAGGCGGGGAACCAGCTTCTGATTGTGCAGAACACTGGGTCGGGCCAGCAGCAGCTGGTACAGTTGGTGCAGCAGAAACAGGAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCTCTGAAGGTGGTGCAGGCTGCCTCCGCCACCCTGCCTCAGGTCCCCCAGAGACAGCCTGCACCCAGCCTGCAGCCAGAGCCTACTCAGCTGCTGATCAAAACGGCATCAGGCGAATGGCAGACTGTGCAGCTCCAGGAAACCACCGTTTCCACGGCAACAACGCCCTCCAGCATGGTTACCACCACCCTGTCGTCCGTGGGGGCCACCAAGCGAACACTGGCGGGGGGCAGGAAGGAGAGGACCCTACCAAAAATAGCCCCGGCGGGGGGGATGATAGCATTGAACGCGGCCCAGCTCTCTTCGGCGGGCCAGGCCGTGCAGACTATAAACATCAACGGGGTCCAGGTGCAAGGAGTGCCCGTCACCATCACCAAcgcaggagGGCAGCAGCACCTGACAGTGCAGACGGTGCAGGGCGGGGCCCTCCAGCTGGGCGGCGTGACCTCCCAGGGCCACCAGGTGCAGATGGAGCAGACTCTGGCTCTGGAGCTGCAGGGCCAGCCTGGGGAGAAGAAACGCCGCATGGCCTGCACCTGCCCCAACTGTAAGGACTCCGAGAAGAGGCCCGGCGAGGTGGGGAAGAGGAAGCACATCTGTCACATCCCGGGCTGCGAGAAGACGTTCCGGAAAACATCCCTCCTCCGGGCACACGTGCGCCTGCACACCGGCGAGCGGCCCTTCGTCTGCAACTGGGTCTTCTGTGGCAAACGCTTCACTCGCAGTGACGAGCTGCAGCGACACGCCaggacacacacagGAGACAAGCGCTTCGAGTGCAACCAGTGTCAGAAACGGTTCATGAGGAGCGACCATCTCACGAAGCATTacaaaacacacataaacaccaaGAACTTGTGAGCTGAGCTGTGCTGTATACCGACTGTATACACAGACATGCCCTGATGAACTAAACCCCATAGAGGGCCGCAGGAGAGGATACCAAGATGGGTGAACCCCAAAAAGGCCCCATACGCCCTGTTCTCCTTACTCCCCCACAGAGGCTTCGTAGCCTGGTGTACATACCAATCCTCCCCCTCACGGACTCAACTGTTCCAGTCAAGTTATTaatgataaaaatatatatatatatatataattatgggCAGCATGCTTACCTACGTAGGCAGAATGCGTATAACAGCGAAAGGTGGTCTCCCAGAAAGACAGACAAGCGTGGCTGCTGTGTTCTGATGACCTCACGCTCTGAGCGCCATATCCAAATCCAGTCACCAGGCCTGAGGGAGGAATGAGAGCGAAACGGATAGATTTAGTCTACCAAAGTACCCGAGCCCAAAGGAGACTCCAGCCACTCTTGCCCCTTCTTGTTTTTCCATGTTTTATTCTTTTCAATATTAATAATAACAAATATTATTGTTGTTGAAGCTCCAGAATAAGGTTTTTTCAAAGTTGATCCTCAAGCCCCACGAGTATCCAAGGTACTTTTCAGTCAAACAAATCCTATTCAGTAAATTGCACTACATGCATATCCTTTTACATAGTTTGAACGGTATTTGTAATTCTATTCTTGTTCAATATCAAAGTAATATTATTGATTTTCCAACAGATAAATGATTTGGTTGAAAAGAAAACATGCATACCTATGAGGCCTTGGTGACCACTTTGAAACCTTACACAGTTCCAGACTTGGAAAACCTAAGTTGGCAAAAGAATTTGTGCATATGCGTACAAACATACATCCACACATACATGGGCAAGTATAGATATTTATGATGTTCAGACATAATACCCTTTTCGGGAGTTTTTTTGTAAATCGAAAATGTAATTTAGGTTTTGGCATTTTTTTGTTTGAGTGAAGAGTTACAAATTATTTTGAATACAGACTCCCTCctaatgagtttaaatgtagtgcTTTGCTATGTGTATATCATTATGATATTAACTAAATATGTCCCAAATATTGGTCTGGCATGACAATCATGTCATTGgatgaagagagaaaaaaaatcgaCATTAAAATGCTTTCTCGGGCCTGTCACAAGTTATTAGATTACATTAGAAGTCATAACTTGTCTATTATGATCTACATTAAGATCCGTTTGAGGCAAATATGTTTGATAAAACATTTCCGATTCGTATGACATAAAAGTTGACAAGCTATCTACTATTATTTATCTAAGGTTTCTGGTGTTTCAATTCCTTTAACCCTCAAGGGAGAACACCAGCGCTATACCTTTACCCGTAGTATTACAATAAGTTCTGTTCAATGAATACATATTGACTGTTTATGTAGCTAACTGCATAACAGcctacatttttttatatttttctttcaAATATTTATAAATGTcccccaacaaaaaaaaatatgatcCTCGTGCATTTTAAAATGAGATCAACATTTCATTGAATAGCCAATATGAAAATCATGTCCAGAATGTCTGGATGCCTAAACTGGGCCTTGGGGACGGAAAGAAAGTCCTGCTCATATTTATGTTTGTATTGTATGTCCTGAATGTGTATATACAATGTGTCTGGGAGACACAGTCAAATGTAGGATAAAAAAGTTGCACTGCCTTGTATTTTGGCCGGCCTGGTTAGAGCTGAAGGAAGTGGACTCTGTACAGTGTGAAAGGAAAATGAGTAATGTGACATTGTATAGCTTCATTCCTGCTTTGTACACCGTTACTTCTAGATGATCCCTTTTCTATCGAATTTAAAGTTGCCTTAGACAGTTGCACCCAGTATTGAAAGAGATTTCTGTCTAATTTCCAGGGAATGGCATTTGTAGAGTTCCTTTTATTTTTGTCTAACTTATGTTACATAATGCCGATGTTTATGTGCACTGACTTGAGCCCAGGTTGAAAATATgtgatttttatttgatttttaagtaatgaTCAGTGGATGAGTTATTTTACCTAAACTGAAAAGGTCCTAATGTTGGTCTCAGTGAACCAGGTGCTTTTCCCTCTCTAAACCTAATCTACCACAGTAATAGATACAGACCCTGTgtatgtctgaaatggcaccctaatccctatattgtgcactactttcaaccacagctctctggtcagaagtagtgcactatatagggaatagggtgacatttcagaCTTCCTTTGTTTAACAGAAGTTCTCAGATATCCAGCTATTGCCCATCTTTTATAACTTGTATTAAGGCGCTTACTACAGGTGCTTGCTCCTTTTTTACAGTCACCCACACCCTCAATAAAGCATTCAAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643131 lncRNA downstream 59285 28071472 ~ 28071741 (-) True G1435189
TU1643093 lncRNA downstream 83025 28044275 ~ 28048001 (-) True LOC110495123
TU1643089 lncRNA downstream 138695 27988179 ~ 27992331 (-) True G1435149
TU1643077 lncRNA downstream 144233 27978615 ~ 27986793 (-) True G1435140
TU1643070 lncRNA downstream 169406 27961402 ~ 27961620 (-) True LOC110493601
TU1643215 lncRNA upstream 77293 28225010 ~ 28227736 (-) True G1435270
TU1643234 lncRNA upstream 102244 28249961 ~ 28250179 (-) True G1435289
TU1643235 lncRNA upstream 103601 28251318 ~ 28251681 (-) False G1435290
TU1643236 lncRNA upstream 103681 28251398 ~ 28251681 (-) True G1435290
TU1643190 lncRNA upstream 104623 28252340 ~ 28252959 (-) True G1435245
XM_021567965.2 mRNA downstream 11730 28095258 ~ 28119296 (-) False LOC110493604
XR_002469176.2 mRNA downstream 11730 28095258 ~ 28119296 (-) True LOC110493604
XM_036949577.1 mRNA downstream 12644 28095258 ~ 28118382 (-) False LOC110493604
XM_036949575.1 mRNA downstream 36203 28077558 ~ 28094823 (-) False LOC110493615
XM_036949576.1 mRNA downstream 36203 28077558 ~ 28094823 (-) True LOC110493615
XM_036949578.1 mRNA upstream 4616 28152333 ~ 28160242 (-) False LOC110493608
XM_036949579.1 mRNA upstream 4616 28152333 ~ 28160242 (-) True LOC110493608
LOC110495125 mRNA upstream 40829 28188546 ~ 28194592 (-) True LOC110495125
XM_036949588.1 mRNA upstream 46705 28194422 ~ 28201620 (-) True LOC110493620
XM_036949591.1 mRNA upstream 107332 28255049 ~ 28277624 (-) False LOC110495126
TU1643092 other downstream 83025 28044275 ~ 28048001 (-) False LOC110495123
TU1643000 other downstream 200004 27929157 ~ 27931022 (-) False LOC110493598
TU1643001 other downstream 200004 27929212 ~ 27931022 (-) False LOC110493598
TU1642248 other downstream 576583 27553723 ~ 27554443 (-) True G1434481
TU1642066 other downstream 901835 27192987 ~ 27229191 (-) True rhbdl3
TU1643202 other upstream 33325 28181042 ~ 28182561 (-) True G1435257
TU1643142 other upstream 41302 28189019 ~ 28200682 (-) True G1435199
TU1643279 other upstream 180413 28328130 ~ 28328877 (-) True LOC110493621
TU1643280 other upstream 218737 28366454 ~ 28367241 (-) True LOC110495156
TU1643452 other upstream 399556 28547273 ~ 28547556 (-) True G1435467

Expression Profile