RNA id: XM_036949579.1


Basic Information

Item Value
RNA id XM_036949579.1
length 3100
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110493608
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28152333 ~ 28160242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGGAAGTGAGGGAGCGGGTGGGGCTTCGCTGggaaccggagagagagagagatagagatagggagagaaagagagagagagtggtcagaTTTGTGAGGCTTTTTATTCTAACAAATGAGACCGTATGTTTGACCCCGGGGTTCGCCTGCTTACAACAGCAAGCTGGATATATTTATGCGTGCACTCGCTCGGTCTTCGTTAGAATATAAATGGATGTCGTTTTTTTTTGTAGGCGCTTATCTGTGCGATAATGAAAGAACGCTTGAAATAGTTTATTCGCTTGTAGCCTATTTATGGTAGATAGCGCTTTGGCCCTTCTTTATTATAAGACAACGGGGATCCATCAAACGGCGGTAGCTATGTGAAGCGTAGAACTCGTTTATTCCCTTTCGTGAATTGAGGAATAATTATGAACAACGCGCAAGATATGTCTCCCGATTTTGTCTTGATGCGCCTGGTTTCCGCGGCCGAGGATGACCGCTTGGACGAGGAGAATGGGAATCTGTCGTCGGGTGGAGTGGTGGCAGGACTCGGTAAAGAGGTCTTGGCTCATAGCAACATGAAAGGGGGCTTGGAATTCGCCCGAGATCCCACGACAGGCCTCGCGCATTCCGGCAATCTCTCTTCGCTGAACGATGCACAGCAGAGCGGCGGAACGGCGGCACCTGACAGCCGGGTGATGGCGACTAAACCGTCGGTGTCTATTCCTCCTCCACACAGCGCCATGGAGGCCAAGGGCTTTGAGTTTGCTCACAGAGGCGGCTTACGGCCTCAGCTCCTTGTGTTTCCTAACATATTGAGGGATGGTGAGGGGATTTTAGAATGTGAATCCGAAGGTCGGAATCAGTCGAGGAAACATATTGGTTTGGACAAGACCTCCGGCTCTGTCTCCGACCTAACCGGAGGCATCAATAACAATACGCTCAGTGCCGGCGACGCGCAACAGCAGAACCATCTGTCCCAGAGCTGGGGTCTGCATCCCCGGGTGGTATTATCCACGGTTGCTGCAGATATCGAGGGAGGTGAGCTATGCCACCGGCACAGTTTGATCACCAACCCATCAGACTGGCCTCCCTTAAGGGATAAATCCAATCCTTTCACAATGATAGAGTCGAAATGGGGGTGCACAACCGGGGATCTGCCCGACGGCCCAGTGTTCGACCTGGCCAGAAGGTTCGGGGAGCTGGGGCTCGGCGCGGTACCCAAGATATTATTCAAGGACGGGGCGATGCCCCAGTGCTCGTGTCAGGGCGCACATGGTCCGGCACCAGCGGGGATGGGGCATGGGGATGACCCCACTGAGACTAGCGATGCTTTGTTGGTGCTAGAGGGGCTGGGGACTGGGGACGTGGCCAGGCTGGGTATCACTGGATGCCCAGAGGATGATTCGGATGAAAGTCGAGCACGTCGAGTTCAGAAGATGTCAGGTGCATTTTCTCTCAGTAGCTTTCAGGCAGAGTTGACCAGACAGATGGAAGGGGTGGCTGGAGAACCTTGTCCGTCGGCGCACGGTGACGCACAAGTATGTAGCCTGCATGGAAACGTACCTAACCCAACTCAACCGAGCCCGGGGGATACAGAACAGAATCCGGAGGTGTCGACATTACCTGCGGCTACACCGAGCTCGGACCGACCTGTCAGTCCAACCCCTAGCCAGGCATCTACACCCCGGAAGCGGGCAGACAAGTGCGTCAGTGAGCCCCGGACTCCAACCGGTCGGGTCGACAAAACACTCAAAGTTCCAGGGAAGTCCAGAAAGGGCTCACTTAAAATACGCCTGAGTAAACTTTTCAGAACTAAAAGCTGTAGTGGTTCCAATAGCCTTCTGGATAAGAGGCCATCAGTGGCCTATTCAATCTCCTCCGCTGGAAGTCTGATGGACATGGCCAGTGGAAGTGGTGGGGAGCATGACGTGGACAGCCAACCCCGAATGACCAGGGCCCAAAGTGCTTTCTCTCCTGCTTCCTTTGCTCCTTTCACTGGCGAGACTGTTTCATTGGTGGATGTGGATATTTCGAGGAGAGGGGCGAACACTCCGCACCCTCCCACGCCTCCACCTCCGCCACGCAGAAGTCTCAGTCTATTAGATGCATTCCTCCGGGCCCTGCCTCACTCCACCTCTTCACAGCTCCTCTCAGCTCCTCCCCCTTCCAGGTTGGCCCCGCCCCCAAGGCTCTGTCCTCTGAGGCGGCCTGAGGCCAGCAACTTCACCGCTAGTCTGAGAGAGCTGGAAAAATGTGGCTGGTATTGGGGTCCTATGAACTGGGAAGATGCAGAGATGAAGTTGAAGGGGAAGCCTGACGGGGCGTTCCTGGTGAGGGACAGCTCTGACCCCCGCTACATCCTCAGCCTCAGCTTCCGCTCCCAGGGAGTTACACACCACACGCGCATGGAGCACTATAGAGGGACATTCAGCTTGTGGTGTCATCCCAAGTTTGAGGACCGATGTCATTCTGTGGTGGAGTTTATCGAGCGAGCCATCATGCACTCCAAAAATGGAAAATTCCTCTACTTCCTGCGTTCACGTGTGCCAGggctCCCCCCTACCCCGGTGCAGCTGCTCTACCCAGTGTCCCGGTTCAGCAACGTCAAGTCCCTGCAGCACCTCTGTCGCTTCTGCATCCGACAAATGGTCCGCATCGACCACATCCAGGAGCTGCCGCTGCCCAAACCACTGATCATGTACCTGAGGAAGTTCTACTACTATGATGCAGAGGAAGAGATGTACCTGTCAATCAAGAGCATTCGACCAGGGGCTGGAGTAGAGAAAGAGGCGGAGTCTCAGACGTAACTGGAAGAGGTGTCTGCTGGTCTGCCAGTCTTCCAGCATCAGCCAATCAAAGTCCTCGGCACCCTCTGAATCCAGTCGGCTGCAGTCAAAGGGGTCCAGATTACCTAGCCCTTCTCTTGACTTTGGCCAATGAGAGTAGAAAGGGACAGTAGTGGAATGCTGGAAAATTGTCCATACGGAGTGCACACATGGGGCTGGGACAAAAAAGGACACAGCCTCATTGAGAACGGACTGGAGAACGGACTCTTCTAGCCTGTAACAAcctgaaaacaaaaaaaaacagcttgAACCTAGACTTTGAATCAAT

Function

GO: NA

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643150 lncRNA downstream 3886 28146700 ~ 28148447 (-) True LOC110493609
TU1643131 lncRNA downstream 80592 28071472 ~ 28071741 (-) True G1435189
TU1643093 lncRNA downstream 104332 28044275 ~ 28048001 (-) True LOC110495123
TU1643089 lncRNA downstream 160002 27988179 ~ 27992331 (-) True G1435149
TU1643077 lncRNA downstream 165540 27978615 ~ 27986793 (-) True G1435140
TU1643215 lncRNA upstream 64768 28225010 ~ 28227736 (-) True G1435270
TU1643234 lncRNA upstream 89719 28249961 ~ 28250179 (-) True G1435289
TU1643235 lncRNA upstream 91076 28251318 ~ 28251681 (-) False G1435290
TU1643236 lncRNA upstream 91156 28251398 ~ 28251681 (-) True G1435290
TU1643190 lncRNA upstream 92098 28252340 ~ 28252959 (-) True G1435245
XM_021567974.2 mRNA downstream 3850 28131026 ~ 28148483 (-) False LOC110493609
XM_021567976.2 mRNA downstream 3931 28131026 ~ 28148402 (-) False LOC110493609
XM_021567973.2 mRNA downstream 4616 28131026 ~ 28147717 (-) False LOC110493609
XM_021567965.2 mRNA downstream 33037 28095258 ~ 28119296 (-) False LOC110493604
LOC110495125 mRNA upstream 28304 28188546 ~ 28194592 (-) True LOC110495125
XM_036949588.1 mRNA upstream 34180 28194422 ~ 28201620 (-) True LOC110493620
XM_036949591.1 mRNA upstream 94807 28255049 ~ 28277624 (-) False LOC110495126
XM_036949589.1 mRNA upstream 94807 28255049 ~ 28277685 (-) False LOC110495126
XM_036949590.1 mRNA upstream 94807 28255049 ~ 28286798 (-) True LOC110495126
TU1643092 other downstream 104332 28044275 ~ 28048001 (-) False LOC110495123
TU1643000 other downstream 221311 27929157 ~ 27931022 (-) False LOC110493598
TU1643001 other downstream 221311 27929212 ~ 27931022 (-) False LOC110493598
TU1642248 other downstream 597890 27553723 ~ 27554443 (-) True G1434481
TU1642066 other downstream 923142 27192987 ~ 27229191 (-) True rhbdl3
TU1643202 other upstream 20800 28181042 ~ 28182561 (-) True G1435257
TU1643142 other upstream 28777 28189019 ~ 28200682 (-) True G1435199
TU1643279 other upstream 167888 28328130 ~ 28328877 (-) True LOC110493621
TU1643280 other upstream 206212 28366454 ~ 28367241 (-) True LOC110495156
TU1643452 other upstream 387031 28547273 ~ 28547556 (-) True G1435467

Expression Profile