RNA id: TCONS_00046174


Basic Information

Item Value
RNA id TCONS_00046174
length 845
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_023346
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12963119 ~ 12983829 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGTCACGAACCAGGAGAGTCTTAAAAACAACTCAGGGAAGCAGCGGCGCTAAGCTTATTGAACGTACAGGTATATAAACTTAGTTTTTGCAAAcactattttctgtttttttaacgAGGTCTGCAGGAACAAACCAACGGGTAAAAGAGCTGTCAAAGCGCTGTTACCATTTAACTGTCCAGTTCTGGGATGTCCGGTCGGGGCTCTGGCAACAACCCAGACCAGTCAGAACCAGAAGCCAACCAGAACGCCAATCAGACGGGTCGTACACAGGCTGAGAGACAGTCAGGATCTGAAGAGGACGTTGACTTAGCACAAGTTCTGGCGTACTTACTGCGAAGGGGCCAGGTACGTCTGGTCCATGGAAGTGGAGCAACAGGCCTACAGCTTGTGCAGTCATATTCAGACTCTGATGAGGACAGTGATGGGGCTTGGGATGGGAGGTTAGGTCATCGATATGACCCTCCAGTGGATGCTCAACCAGACACACAGGAGGTGGATCGCAGCGAGATCCACACTCAGATCCTACTGGCTACTGCTTCCTCTGGCTTAAAGGGCAGACACAGTTTCACACATATGCTGGCTGAGCGGGAACAGGGGCGATGTCGTGGGTCAAGTTTCTCTCATGGAGAGTGCAGCCGTATTCGTTCACATTTTTTGCCCAATcatgtggtttacaaggacacttATCAGCAGAAAGTATTTTGTGGAGTCTACAGTGATGAGGGAAATATGTTCCTGTCTGCATGCCAAGACCAGAATATCAGGTTATATGACACTAGTAGGGGTCGTTTTACTCTGAAGAAGACTGTGAAGGCCAGAGACGTGGGTTGGAGTATTCTG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050809-116 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Orthologous to human DCAF11 (DDB1 and CUL4 associated factor 11).

Ensembl:

ensembl_id ENSDART00000131370

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047163 lncRNA downstream 228699 12741936 ~ 12746499 (-) False XLOC_023341
TCONS_00046163 lncRNA downstream 228699 12741936 ~ 12746499 (-) True XLOC_023341
TCONS_00047162 lncRNA downstream 230290 12741936 ~ 12744908 (-) False XLOC_023341
TCONS_00047161 lncRNA downstream 373469 12596538 ~ 12601729 (-) True XLOC_023339
TCONS_00046160 lncRNA downstream 845742 12128505 ~ 12129456 (-) True XLOC_023337
TCONS_00047164 lncRNA upstream 77237 13058667 ~ 13125473 (-) True XLOC_023348
TCONS_00047165 lncRNA upstream 242818 13224248 ~ 13245885 (-) True XLOC_023349
TCONS_00046176 lncRNA upstream 270882 13252312 ~ 13255032 (-) False XLOC_023350
TCONS_00046181 lncRNA upstream 359634 13341064 ~ 13347517 (-) True XLOC_023351
TCONS_00047166 lncRNA upstream 373848 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00046169 mRNA downstream 16530 12954489 ~ 12958668 (-) True XLOC_023345
TCONS_00046168 mRNA downstream 36276 12920019 ~ 12938922 (-) True XLOC_023344
TCONS_00046167 mRNA downstream 142699 12754370 ~ 12832499 (-) False XLOC_023343
TCONS_00046166 mRNA downstream 142699 12754370 ~ 12832499 (-) True XLOC_023343
TCONS_00046165 mRNA downstream 204841 12754013 ~ 12770357 (-) False XLOC_023343
TCONS_00046175 mRNA upstream 270050 13251480 ~ 13272843 (-) False XLOC_023350
TCONS_00046177 mRNA upstream 273979 13255409 ~ 13272842 (-) True XLOC_023350
TCONS_00046178 mRNA upstream 354897 13336327 ~ 13349802 (-) False XLOC_023351
TCONS_00046179 mRNA upstream 355783 13337213 ~ 13349464 (-) False XLOC_023351
TCONS_00046180 mRNA upstream 356693 13338123 ~ 13349472 (-) False XLOC_023351
TCONS_00046161 other downstream 818554 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046151 other downstream 1563257 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046142 other downstream 1926638 11048446 ~ 11048560 (-) True XLOC_023326
TCONS_00046141 other downstream 1963647 11011436 ~ 11011551 (-) True XLOC_023325
TCONS_00046140 other downstream 2027053 10948064 ~ 10948145 (-) True XLOC_023324
TCONS_00046184 other upstream 628168 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046187 other upstream 1552412 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046200 other upstream 2232441 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046203 other upstream 3092659 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046204 other upstream 3573439 16554869 ~ 16554983 (-) True XLOC_023368

Expression Profile

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