RNA id: TU1643409


Basic Information

Item Value
RNA id TU1643409
length 1634
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC110495129
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28496785 ~ 28521285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATGGGTGATAGCATGTATGCCAGGTCTCTCTGCATGTCGTTATTCTGACACCCATAAATACCTTACTGACATTTTGAACTTGGCAACATTCCCACCTCAAAACTTGTGCAACGGTTTAACATACTGTGGTAGCATATCATTGGACAAGGCACCAGTATACTAACTAGTCCGCTCCAGGGGGAAGTTTTCCCTAAGtaaagatctaggatcagcttcccctcccccaatcctaaacGTAACCATTACTGGGGAGAAATGCAAAACTAACCCAAGATCAGTGTCTTGGTGCTACTTCACTCTTCACCCACTCATCccttccactccctcctcccctgaTAGAAATCCTCCCTGGAGGCCACGCTGGCAGACACCCAGAAACGCTACTCTGCTCAGCTGGCAGGGCTCCAGAGCATGGTGACTAGCCTGGAGCTCCAGCTCTCCCAGCTCCACGCCAACATCGCCCACAACAAGCAGGAGTACGACATGTTTGAACCTCAAGACCCGGCTGGAGATTGCAGAGAACAGGAGGCTGCTGGACGGAGAGGACGACAGCTCCACCCAAGGGGTTACCAAGATGATCACCGTGACCCAGACCATTGTGGATGGAAAGGTGATGGTTCTGTTAACAGAACCATCAATAAAGATTATGTGGTTGAATGAGAATGGGCTGTGTGGTTTCACTTGTTTCAGAGATATGAATGCTTTCTAATAGACTGACTATATGAATCTGTGAGTATGGATGTCATAGCAGATACATTTTGTGTTCTCATTTCATATGACTTGATTTCAATTCGACATCTTTCCACCAAAACATGGTGTCCAGCACTAGAGTTGACTCCACAAACACTCTccatacagtatataactctgaATCTAATGCTTGAAAAACTGACTGTTTGATTAATAGAGATAGAATGATGTAATTTTGCCGACAGCCAGTGTGGCGGCCCTgccactctgtctgccgaattctttctctttgctcgtTTTCCTTGGTAGGATGTCAGGgggcggagccgggagggtcgtcagcgagGTGGGACGCACCTGGGCTCGGGTGTGTCCCGGGGATAAGTACACCTTTCCCcgttcattgaggagactctctccacgcAGACACACTGTTAtttttggttgtggcattttgtggtttgtttgttttggcacctctcaacacccctcattttCACCATCTATGCAtgcaaccactcacttacactactgaatACTGACTACACACCCCGTTGTTACTTGTATATAGTTTTAGTTAAGAAATATTTAGTtaagaaatatatttttgtttttccttatctccacgttgtctccctcatgacttccaccgaaggtggttcctctccctgttctgtTGGTGCTCGGGGGTCggcgtcaccggcctactagccataaccgatccatgtttccttttccatttgttttgtctttggttcattcacacctggttttcatttgctTTAATTTATGTGTGTATATTTACCCCTGTTTCCCCGCTTAGGTTTGTGCGGGATAATTTTTCTTCTTGCTTGTGGAGGCTTTCCTCAGTGTATTTCGCGTGTGGTTATTATAGTAAGGTGCGTTGTGTTTTTGCGCCTTACGAGAATACTGTTACTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643365 lncRNA downstream 389 28486078 ~ 28496460 (-) True G1435386
TU1643367 lncRNA downstream 1167 28481275 ~ 28495682 (-) True G1435388
TU1643395 lncRNA downstream 2941 28454183 ~ 28493908 (-) True G1435415
TU1643363 lncRNA downstream 10273 28474302 ~ 28486576 (-) True G1435384
TU1643362 lncRNA downstream 30111 28456493 ~ 28466738 (-) True G1435383
TU1643415 lncRNA upstream 4940 28503697 ~ 28504230 (-) True G1435433
TU1643416 lncRNA upstream 5547 28504304 ~ 28504823 (-) True G1435434
TU1643428 lncRNA upstream 18942 28517699 ~ 28517973 (-) True G1435445
TU1643364 lncRNA upstream 23983 28522740 ~ 28527066 (-) True G1435385
TU1643443 lncRNA upstream 41807 28540564 ~ 28540783 (-) True G1435458
XM_036949614.1 mRNA downstream 99614 28394623 ~ 28397235 (-) True LOC110493625
XM_036949612.1 mRNA downstream 107116 28387136 ~ 28389733 (-) True LOC118936556
XM_036949613.1 mRNA downstream 127829 28366452 ~ 28369020 (-) False LOC110495156
XM_021570485.2 mRNA downstream 129543 28366452 ~ 28367306 (-) False LOC110495156
XM_021568007.2 mRNA upstream 56797 28555554 ~ 28560692 (-) True LOC110493627
XM_021568009.2 mRNA upstream 111628 28610385 ~ 28622231 (-) True LOC110493630
NM_001281396.1 mRNA upstream 125483 28624240 ~ 28626947 (-) True LOC101268960
XM_021568016.2 mRNA upstream 138255 28637012 ~ 28645298 (-) False LOC110493634
XM_021568017.2 mRNA upstream 138255 28637012 ~ 28645298 (-) False LOC110493634
TU1643280 other downstream 129608 28366454 ~ 28367241 (-) True LOC110495156
TU1643279 other downstream 167972 28328130 ~ 28328877 (-) True LOC110493621
TU1643142 other downstream 296167 28189019 ~ 28200682 (-) True G1435199
TU1643202 other downstream 314288 28181042 ~ 28182561 (-) True G1435257
TU1643092 other downstream 448848 28044275 ~ 28048001 (-) False LOC110495123
TU1643452 other upstream 48516 28547273 ~ 28547556 (-) True G1435467
TU1644814 other upstream 1113495 29612252 ~ 29612608 (-) True G1436694
TU1645492 other upstream 1439569 29938326 ~ 29943730 (-) True LOC110495137
TU1645583 other upstream 1551845 30050602 ~ 30114123 (-) True G1437411
TU1645686 other upstream 1742693 30241450 ~ 30242963 (-) False G1437507

Expression Profile