RNA id: XM_036949620.1


Basic Information

Item Value
RNA id XM_036949620.1
length 2476
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110493634
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28637012 ~ 28645555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGGGTGTAATGCAAACATGATGCCCTTAACAGAGGAGAAAGGAATAGTTCTGGAAAATTCGACTGAAATCTGTGTGAACCCcacatcatttatttatttattttttcattttgagGACTgtttctgctagctagctaactaaacctgattctagccacacacacactggtggggGACAAAGGATTTTGGGACCCAAATGACTGGAATAAACTGATATAATTCTTCCTCTCTGCCAAGATGTCAAaaagagaaagagaaaggccatatgcccctccccctcccccagcccCTACAACACAATTGCCCAACACCCCTGGGTTTGTGGGGTACAACCCCTACAGCCATCTGGCTTATAACAACTACAGGCTGGGAGGGACAACAAGCAACAACAGTCGGGCAACGAATTCTTCAGGAATAAACATTCCAAAGCCACCCAAGCCGCCAGACAAGCCGTTGATGCCATACATGCGATATAGTCGCAAGATTGAGTACAATGAGAGCATGAAGGCCTACCACAACTCTCCAGCCTACCTGGCTTACGTCAACGCTAAGAGCCGCGCCGAAGCCGCTCTGGAGGAGGAAAGCCGACAGCGCCAGTCTCGTCTCGACAAAGGCGAACCGTACATGAGTATCCAGCCAGCAGACGACCCAGATGATTACGACGATGGATTCTCCATGAAGCACTCGGCTGCCGCCCGTTTCCAGCGCAACCACCGCCTGATCAGCGAGATCCTGAGCGAGAGCGTGGTCCCCGACGTGCGCTCCGTCGTCACTACCGCCCGCATGCAGGTCTTAAAACGGCAGGTCCAGTCTCTTATGGTGCACCAGgtctctctctgtgtgtctggtccaCAGAGGAAGCTGGAGGCGGAGCTACTTCAGATTGAAGACCGCCACCAGGACAAGAAAAGGAAATTCATCGATGCCACAGAGTCTTTCACCAGCGAGCTGAAAAGGCTGTGTTGTATGAAAGTGGAGGTGGACATGGAGAAGATATCTGCAGAGGTCGCTGCGGCAGAGGATGCATCCCGCAGGCGCCTGTCGGAGCGGGAGAAGGAGGCGTCCACGTCCTCTtgcctggaggaggaggagaaaccaGTTGGCCCGTCAAACGGCAGCAAGAGCCAGCAGGAGTCTTTCAGTGACAGCAgcaacaaggagagagaggagactgaacccAGCCCCATGGATACTGGTGAGAAGTCAAAGGCCTCGGAGGAGTCAATGGCTCGTCCTGCCAGTGAGGTTGAGGAGGGGGCGCCGTCAGAGGACAAGGAGAGTGTTCCAGaaggggtgatggaggagggcaccagtgacagtaacacagggtcgGAGACCACCTCTGCCGTGACGGAGGACGCCCCGCCCAGCGAGCCAGCAGCCTCAGAGGGGCCGAGCAGGGCACGCTCTACCGCCCACTGAGGTTTCGACCTATGACCTTTGGGCCGAGAAATGTCCATGATGCATCACTCCATCTCTACAGTCACACTCTGATGATAACACATTGCACATTAGTATCTATGTGAACAAAAGCTGTGTTTTATGGGGTTTTATGCAATTGGTTGAATCTTCAGAGCTCTGTTGGCAGGGTCAAAATAGACCTGCTGTCAATTTGCAAAGCGCTTCAAGTCCTCAAAGCAAAGCAATTATCCCAACTAAAGTGAATGTCTAAATTGAGTCACAATAAAGCCCACGTGAATTCCCCGTAATTCCATCACAGACCGCAGTGCCAGTCGAAAGCAACCATCCATCACCTGTCACTATATCAAAACATATCTCCTGTCTTATTCTATGGTACTATATCTGGCAGACACCAGATCTTACCAATTGAGGCTGGTTGTAAAAACTGTCACAAAAAAATGAGTTGTTCAATGTTTAATTACTTGTTCTTTGGAGTGTAATGTTGCTTTCAATGTTATTTTTGCATGGTGTCGCAACTCCTCTAATGGGAGAGTTTGCTTTAGTAGCGGAGGGAGTGGGGCGACTCCTCTGCCCAATATTCTTTAATGTTTACTCTAAGTATCAGTATTAAGTGACAGTATTGTCTCAGGAGTTAATAGAAATAAGTAGTTGTTTTCATTATTTATTAATATTCTTGTGTATTGTGAGTCCTGGGCCCAGTCCATCCGTCCACCAACCTGTTGTAATGCCACGAGTTCATCCATACTGTACAGTTTTACCAGTCAGTGTTCCAAAGTCTGCTAGCTCTCAATCAAATCAAAAGCTGTATGCTTAGAACAACCTTTCAGTGTTATGTTATTATGACCAGTAAGTACAATGTTCAACCCAGAACAAACTCTTAAATGTTAATATGCAATGTAATAAGCAGTGTTGCAAGGTTTGCGTGAACATGAGTGGTTTTCCATCTCATCCTAAAGCAACTTGAAGAGCAGAGTGAGTCATCAACATACTGTCTTAAAATCAATTTTGTTTGACATATTTATACCAATAAACTTTTCTACCCTGACATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643902 lncRNA downstream 58327 28578453 ~ 28578685 (-) True G1435869
TU1643900 lncRNA downstream 61793 28573837 ~ 28575219 (-) True G1435867
TU1643896 lncRNA downstream 65206 28571481 ~ 28571806 (-) True G1435865
TU1643443 lncRNA downstream 96229 28540564 ~ 28540783 (-) True G1435458
TU1643364 lncRNA downstream 109946 28522740 ~ 28527066 (-) True G1435385
TU1643943 lncRNA upstream 28919 28674474 ~ 28688486 (-) True G1435905
TU1643941 lncRNA upstream 43416 28688971 ~ 28754020 (-) True G1435903
TU1643979 lncRNA upstream 58700 28704255 ~ 28774639 (-) True G1435933
TU1643981 lncRNA upstream 62918 28708473 ~ 28709421 (-) True G1435935
TU1644077 lncRNA upstream 214407 28859962 ~ 28861576 (-) True LOC110493648
NM_001281396.1 mRNA downstream 10065 28624240 ~ 28626947 (-) True LOC101268960
XM_021568009.2 mRNA downstream 14781 28610385 ~ 28622231 (-) True LOC110493630
XM_021568007.2 mRNA downstream 76320 28555554 ~ 28560692 (-) True LOC110493627
LOC110495129 mRNA downstream 115727 28496785 ~ 28521285 (-) False LOC110495129
XM_036949614.1 mRNA downstream 239777 28394623 ~ 28397235 (-) True LOC110493625
XM_036949621.1 mRNA upstream 5449 28651004 ~ 28670920 (-) True LOC110493635
XM_021568022.2 mRNA upstream 97270 28742825 ~ 28748702 (-) True LOC110493637
XM_021568027.2 mRNA upstream 116225 28761780 ~ 28763712 (-) True LOC110493640
XM_021568029.2 mRNA upstream 118586 28764141 ~ 28768448 (-) False LOC110493641
XM_021568030.2 mRNA upstream 118586 28764141 ~ 28768448 (-) True LOC110493641
TU1643452 other downstream 89456 28547273 ~ 28547556 (-) True G1435467
TU1643280 other downstream 269771 28366454 ~ 28367241 (-) True LOC110495156
TU1643279 other downstream 308135 28328130 ~ 28328877 (-) True LOC110493621
TU1643142 other downstream 436330 28189019 ~ 28200682 (-) True G1435199
TU1643202 other downstream 454451 28181042 ~ 28182561 (-) True G1435257
TU1644814 other upstream 966697 29612252 ~ 29612608 (-) True G1436694
TU1645492 other upstream 1292771 29938326 ~ 29943730 (-) True LOC110495137
TU1645583 other upstream 1405047 30050602 ~ 30114123 (-) True G1437411
TU1645686 other upstream 1595895 30241450 ~ 30242963 (-) False G1437507
TU1645805 other upstream 1821768 30467323 ~ 30468772 (-) True G1437609

Expression Profile