RNA id: XM_021568029.2


Basic Information

Item Value
RNA id XM_021568029.2
length 2012
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110493641
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 28764141 ~ 28768448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaagaagaagccaaagaagaagaagaagaagaacgcACTCTTAAACAACCAGACAAATAATCAGAAAGTCCGGAAGTACAAAGAAAACACAACACGCTAACTTAGCATGCAAATGCCGATGTTATTTAGATAATAACATAGATTTGTTTTGTCAGATACAATAACCACATAGGTAGAGGACACGTTTATTCATATCTTATTACTCAATCGGACGATCTAAGTCAAGATGGGAGGAGGTGACCTCAACTTGAAGAAGAGCTGGCATCCCCAGACTATGAAAAACATAGAGCGGGTGTGGAAGGCTGAACAGAAGCACGAGGCTGAGGCGAAGAAGATCGAGGAACTTCAGAAGGAGCTGAGAGAGGAACGAGCTCGAGAAGATATTACCAGATTCGCTCAGCAGACTGGGGCTCTAAAGAAAAAAGATGACCGGTTGGACTGGATGTACCAGGGGCCAGGTGGTCAGGTGTCCCGTGATGAGTACCTGCTGGGCCGCCCGATCGACAAGCAGATCACCCAGCAGTTTGAGGAGCCAGAGAGCGGTCCATCCGAACAAACCGGCCTGCTGCCTGGCTCAATCTTCAACCCCTCCACCCCTGCATCCAATCTCGACATGGCCGCCAAGATCAGAGAGGACCCGCTGTTTGATATCAAGAaacgggaggaggagaagaagagggaggtcTTGACAAACCCAGTGAAAATGAAGAAGATCAAAGAAATGCTGCGTCAGAATCTTGAAAAGAAAGACAAgaaaaagaagaggaagaaggacaagaaggagaaaagggaggagaaagagaggagaaaggagaagaagCATAAGAGAAGGAGCTTGAGCTCAAGCTCTGTGGACGAAGACAAAATACACAGGCACCATTCTAAAGAGGAATCCAAAGAAACAACCCACTCACATTCCCACCATCGCAGTGTCCCCACTGGCTATGGACTACAGTTTCCAGCTGGGAAGCATCATCAGTCCTCAAAGCCCACCAATCACTTAAGGCACCGTTCTCAGGAAAGGAGCCGCTCTCGATCGCCTCAAAGGACAGACTGGAACGGCCATCATTCCTCTCACAGGACAGACAACCACTCCTCTCACAAATCAGAGAACCACTCATCCCACAGGACAGACCAGTTTAAAGTTCCACAGTTCCAGCGCCCCAAAGCCCCCCCCAGCCCACAGAAAGATCGCTACCAAAGGCGTCAGAGCAGTACTACCAAATGTCTCTCTGCTGAAGAgttggagaagaagaggagggagatgatGGACTTTGCCAAACAGAGAGACGAAGAGCGCGAAAGCAACATTAGAAGTTACAAACGACAGGATGAACAGGAGAAGGagcgggagaaagagaaaggcgGCAAGCATGACCGCAACGCTGGCTTTATCCATAACATGAAGCTGGAGAGTGCCTCCACCTCTTCCTTGGAGGATCGAGTCAAGAGAAACATCCACTCCATACAGAGGACCCCCGCATCCCTGGAGAAGAATTTCATGAGGAGATGAGAACTAGAAGAAGCAGGAATGGGTTGATTGAGGAGAGAGTAAAAATATGCACCAGCTACCACACTGAAATATGTGCACCGGTTTGCCAGGACTGCCAACTCATTTATAATTTAATAAACAAAACAGACACTGCAGAGGCACCATGCATTTGTACTCGGGGCCCTGTGAAACTGCCCCTTAGCCATTGCCCTGACTAAAGCAATGCAAAGGATCTGACTTACTCTGTAATGGAAAAACTCACCCGTGCCATTCACCAGCAACAGCAAGCCATACTCACCTTTTATAGAATGAGCAATGTTGGATTTGTTTTTAAGTGGAAATTGTATATTGTGTTCTCTGTAATGTTTAGGATTATTCAAACTTTTATCAGACACAACCCTTTTGTAAATGATGTTTCTTGGAAATCTTTAGTGTATTGCTGTACCGGAGAAGAATTGTGGATCTTAATAAAACATTGTTCCTAGAGCTCTTTTGAGTTGGGGGCTAACAAACTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1643941 lncRNA downstream 10121 28688971 ~ 28754020 (-) True G1435903
TU1643981 lncRNA downstream 54720 28708473 ~ 28709421 (-) True G1435935
TU1643943 lncRNA downstream 75655 28674474 ~ 28688486 (-) True G1435905
TU1643902 lncRNA downstream 185456 28578453 ~ 28578685 (-) True G1435869
TU1643900 lncRNA downstream 188922 28573837 ~ 28575219 (-) True G1435867
TU1644077 lncRNA upstream 91514 28859962 ~ 28861576 (-) True LOC110493648
TU1644121 lncRNA upstream 159316 28927764 ~ 28928014 (-) True G1436041
TU1644095 lncRNA upstream 168249 28936697 ~ 28939917 (-) False vig-2
TU1644096 lncRNA upstream 168249 28936697 ~ 28939917 (-) True vig-2
TU1644137 lncRNA upstream 188891 28957339 ~ 28957786 (-) True G1436056
XM_021568027.2 mRNA downstream 429 28761780 ~ 28763712 (-) True LOC110493640
XM_021568022.2 mRNA downstream 15439 28742825 ~ 28748702 (-) True LOC110493637
XM_036949621.1 mRNA downstream 93221 28651004 ~ 28670920 (-) True LOC110493635
XM_036949620.1 mRNA downstream 118586 28637012 ~ 28645555 (-) True LOC110493634
XM_021568014.2 mRNA downstream 118589 28637012 ~ 28645552 (-) False LOC110493634
XM_036949626.1 mRNA upstream 1847 28770295 ~ 28784724 (-) True LOC110493642
XM_021568044.2 mRNA upstream 77433 28845881 ~ 28848498 (-) False LOC110493650
XM_021568045.2 mRNA upstream 77433 28845881 ~ 28848504 (-) True LOC110493650
XM_021568037.2 mRNA upstream 90734 28859182 ~ 28886611 (-) False LOC110493648
XM_021568038.2 mRNA upstream 90734 28859182 ~ 28886611 (-) False LOC110493648
TU1643452 other downstream 216585 28547273 ~ 28547556 (-) True G1435467
TU1643280 other downstream 396900 28366454 ~ 28367241 (-) True LOC110495156
TU1643279 other downstream 435264 28328130 ~ 28328877 (-) True LOC110493621
TU1643142 other downstream 563459 28189019 ~ 28200682 (-) True G1435199
TU1643202 other downstream 581580 28181042 ~ 28182561 (-) True G1435257
TU1644814 other upstream 843804 29612252 ~ 29612608 (-) True G1436694
TU1645492 other upstream 1169878 29938326 ~ 29943730 (-) True LOC110495137
TU1645583 other upstream 1282154 30050602 ~ 30114123 (-) True G1437411
TU1645686 other upstream 1473002 30241450 ~ 30242963 (-) False G1437507
TU1645805 other upstream 1698875 30467323 ~ 30468772 (-) True G1437609

Expression Profile