RNA id: TCONS_00046178


Basic Information

Item Value
RNA id TCONS_00046178
length 2900
RNA type mRNA
GC content 0.36
exon number 9
gene id XLOC_023351
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13336327 ~ 13349802 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaaacaaaccacAGCACAAAATCCAACATACTTTGCTAACGTGATAAGCTAAGTTACTTACAAAGGTGAGTGCTACTTTTCACACCAAATGAAGTTGTTTTTTCTCATGTTGGACGTTAGTAGGACAGTAGGACTACTCGGAGAAAATATTGAAATTAAGTATAAAATTCACCTTAGTGTTAACCTTACAGGTACTGCACAATAATGTGCTAATTTTATCAAGCAAGCAACGTTACTTTCTGTGCGATAGGAGTTGTGTCCTCCGCGCCAATAGATGGCGCTGTGCCCACGgtttataataaacaaacagatggcgGGAACGTTCGGTTGTGGTTTCATAATCATAAACCTGAAGATGGAGTCGGAGTCACATGAGATTACGAGTACTAGTGATAAAACAACTTCACAAGAAGTTAATAACGTTGTTCAGTCATGGATTATTGACTATTATTTTGCAACATTATGTCGGCTTTTTAGAGAAAGGTCTTCGGTGGAGTTTCGAAAAGAACTGAAGTTATTTGAAGGTAACGTAATGAGTTTACATGCTAACCTGTTTTGATGTGAAGTTAAACATCAAGCGGTAACTTTGCTTACATTTTGACTTCCGCTTGGTGTAACACCcttgtaatgttttgttttttattttgatgtgttTAGGTTTAGTGGATGAGCTCGAATCACATTCCTCTCAGAGAACCGTCTGTTGCTTCCTAGCCAGAGTGATGGACGGGGAAAACCTGGATGTCCGTTATGATCACGTTGCTCGAATCACCCCCTTGATGTCAGCTGTCCCAGTTTGGGAGTCATTAAAGGACTTTTCTGATCCTACTTTACATGGAAAGATTCAGACGCTACTGATGGTTCAGagtgtctctgtgtgtgtcaaGAAAGGATATGACAAATTGGCCAAAGAAACCTTGCAGTGGCTGGAAGAACAGACAGATGTACCAGAGAAGCTACAACGAAAGCTTGCCACCATTGTGAACAAGAAGGATGCATATGATCAGATCCTGATGAACTTCAGTTTTGATAAGCTAATGGAGACCATCGACACATTCCTTGAAGCTTTCAACCAGCAATATGCCTCCGTTTTCTTACTCGAAgcaGCATCAAAAGTTGTTCAAGCTCGTCATGAGAGATCTGAACTGGAGGAAACTGAAGAGACACCACCCAGCCTACAGTCAGACAAATCAGAATCAGAAAATGAGGAACATGAGGATCCACTTGTGGTAAATATCAGACCCAAAAGAAGACTTCTTCCAAAACAAAATGATCCATGGAAGCCAGAAACTGCAAAGAAAGCTCACGCCACACTCAAGAGAACCTCTATTTGCAAGGTTTCCAGGAGAAGTAATACCCCTTCCGAATTACACAGCAATATTACTGTGTCACGCCATTCCAGGAAGaaatGGACTGATGTAGAAGACAAGAAGCTGAAAGCAGGTGTGAAGAAACATGGGGTTGGCAAATGGAGCAAAATCCTTAATGACTTTGATTTTGACAATCGCACCACTGTTAATTTGAAAGACAGATGGAGAGTCCTAAAGAAACAGAATCTTGTCTCTTGAGCTACAGCTGCCTTctgcttttaatatttaaagacaTTTCTTGTATTTCAGTTCTCAGCTGTGCATAGTGcttgtgcaatatatatttatattttaatggtagatgttttttatttctttaaaccaatttactttatttagtttACAACATAACCAACATTTTTTTACGATGTCACAGAATTTCAGCAGTTATACATGTCATTTCACACAGCAAGTAAAAAATGTTAGTATTTTTTCTGAATTGATTAAAAGCTTTCAGCATTATGTTGCCATTTATTTAAACTGTAAGACCAACATTTGTCCAGTAGAGGATGCAGATGAGTCTAGAGTAAgctttgttttgtatttgaattcTGTTCATCTTTCACAGGAAAAAAACGTTTTTGAAATGATGCAGCTGTAAAAGTgaaagtgttgtaaataaatgtgtatacatTTGAAATGATTTGCATCTAATAGTACATTTAGTTGATTTGTGGGTTTTACCAAGGGCTCTGGaagaatgtttttaaatgaagatgAAGCTGTGCACTTGTGGACAGGAGCAGTGCTGTAGTCTCTGTACTTTCCTCCATGTTCCTCTGCAAGGAGGGTTTCCCACCGCCTGCCAGTGAAGAAGATCATTCCTGCGCACAGAAGAAGACACTCACTTTATCCACATGCTTGTTTCTTTATTGTTCTTCATAGcatcttaaagggatatttcaccccaaaaatgaatattaagTTACCGTTTACTGACCCTCCACTTGTTTTaaacatatttgagtttcttctgatgaacagaaAAGATCATATTTTGGAATAAATCGATAAAAACTGGGTACCATTATCTTTCATAGGTAATGAAAGTTATATAATGGTTtctaacattgttcaaaatatcttcttttgtgttcagtaggGAAAAACTCATAAAAGCTTGGAACCGCATCAAGGaaagtaaaaattaaatgttttggtgaactatccctttaagtatttaaattgcTAAACTGTAaagatgtatgtatatatatatatatatatatatatatatatatatatatatatatgtatgtatgtgggtgcgtgtatgtatgtatgtatatatatatatatatatatatgtatgtgggtgcgtgtatgtatgtatgtatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatacatacacacacacacacacacacatatatatatatgtgggtgtgtgtatgtatgtatatgtgtgtgtatatatatatatatatatatatatatatacatacacacacacacacacacacacacatagggaaAA

Function

GO:

id name namespace
GO:1905778 negative regulation of exonuclease activity biological_process
GO:0008156 negative regulation of DNA replication biological_process
GO:1905839 negative regulation of telomeric D-loop disassembly biological_process
GO:0007004 telomere maintenance via telomerase biological_process
GO:0000723 telomere maintenance biological_process
GO:0000783 nuclear telomere cap complex cellular_component
GO:0005634 nucleus cellular_component
GO:0071532 ankyrin repeat binding molecular_function
GO:0042162 telomeric DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003691 double-stranded telomeric DNA binding molecular_function
GO:0003720 telomerase activity molecular_function
GO:0008301 DNA binding, bending molecular_function
GO:0008017 microtubule binding molecular_function
GO:0098505 G-rich strand telomeric DNA binding molecular_function

KEGG:

id description
ko03032 DNA replication proteins

ZFIN:

id description
ZDB-GENE-090612-2 Enables telomeric DNA binding activity. Predicted to be involved in negative regulation of cellular metabolic process and telomere maintenance via telomerase. Predicted to act upstream of or within telomere maintenance. Predicted to be located in nucleus. Predicted to be part of nuclear telomere cap complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Orthologous to human TERF1 (telomeric repeat binding factor 1).

Ensembl:

ensembl_id ENSDART00000164729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046176 lncRNA downstream 81295 13252312 ~ 13255032 (-) False XLOC_023350
TCONS_00047165 lncRNA downstream 90442 13224248 ~ 13245885 (-) True XLOC_023349
TCONS_00047164 lncRNA downstream 210854 13058667 ~ 13125473 (-) True XLOC_023348
TCONS_00047163 lncRNA downstream 589828 12741936 ~ 12746499 (-) False XLOC_023341
TCONS_00047166 lncRNA upstream 5476 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00047167 lncRNA upstream 1092152 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047168 lncRNA upstream 1655710 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00046849 lncRNA upstream 2395268 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047169 lncRNA upstream 2796701 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046175 mRNA downstream 63484 13251480 ~ 13272843 (-) False XLOC_023350
TCONS_00046177 mRNA downstream 63485 13255409 ~ 13272842 (-) True XLOC_023350
TCONS_00046171 mRNA downstream 333334 12970119 ~ 13002993 (-) True XLOC_023347
TCONS_00046173 mRNA downstream 352498 12975186 ~ 12983829 (-) False XLOC_023346
TCONS_00046170 mRNA downstream 354865 12963119 ~ 12981462 (-) False XLOC_023346
TCONS_00046182 mRNA upstream 12044 13361846 ~ 13364311 (-) False XLOC_023353
TCONS_00046183 mRNA upstream 12470 13362272 ~ 13566015 (-) True XLOC_023353
TCONS_00046185 mRNA upstream 852525 14202327 ~ 14212521 (-) False XLOC_023355
TCONS_00046186 mRNA upstream 852528 14202330 ~ 14209202 (-) True XLOC_023355
TCONS_00046188 mRNA upstream 1209526 14559328 ~ 14577544 (-) False XLOC_023358
TCONS_00046161 other downstream 1179683 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046151 other downstream 1924386 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046142 other downstream 2287767 11048446 ~ 11048560 (-) True XLOC_023326
TCONS_00046141 other downstream 2324776 11011436 ~ 11011551 (-) True XLOC_023325
TCONS_00046140 other downstream 2388182 10948064 ~ 10948145 (-) True XLOC_023324
TCONS_00046184 other upstream 259796 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046187 other upstream 1184040 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046200 other upstream 1864069 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046203 other upstream 2724287 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046204 other upstream 3205067 16554869 ~ 16554983 (-) True XLOC_023368

Expression Profile

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