Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00046181 |
| length | 667 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 5 |
| gene id | XLOC_023351 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 13336327 ~ 13349802 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1905778 | negative regulation of exonuclease activity | biological_process |
| GO:0008156 | negative regulation of DNA replication | biological_process |
| GO:1905839 | negative regulation of telomeric D-loop disassembly | biological_process |
| GO:0007004 | telomere maintenance via telomerase | biological_process |
| GO:0000723 | telomere maintenance | biological_process |
| GO:0000783 | nuclear telomere cap complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0071532 | ankyrin repeat binding | molecular_function |
| GO:0042162 | telomeric DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0003691 | double-stranded telomeric DNA binding | molecular_function |
| GO:0003720 | telomerase activity | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0098505 | G-rich strand telomeric DNA binding | molecular_function |
| id | description |
|---|---|
| ko03032 | DNA replication proteins |
| id | description |
|---|---|
| ZDB-GENE-090612-2 | Enables telomeric DNA binding activity. Predicted to be involved in negative regulation of cellular metabolic process and telomere maintenance via telomerase. Predicted to act upstream of or within telomere maintenance. Predicted to be located in nucleus. Predicted to be part of nuclear telomere cap complex. Is expressed in several structures, including gill; heart; liver; pleuroperitoneal region; and post-vent region. Orthologous to human TERF1 (telomeric repeat binding factor 1). |
| ensembl_id | ENSDART00000144292 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00046176 | lncRNA | downstream | 86032 | 13252312 ~ 13255032 (-) | False | XLOC_023350 |
| TCONS_00047165 | lncRNA | downstream | 95179 | 13224248 ~ 13245885 (-) | True | XLOC_023349 |
| TCONS_00047164 | lncRNA | downstream | 215591 | 13058667 ~ 13125473 (-) | True | XLOC_023348 |
| TCONS_00047163 | lncRNA | downstream | 594565 | 12741936 ~ 12746499 (-) | False | XLOC_023341 |
| TCONS_00046163 | lncRNA | downstream | 594565 | 12741936 ~ 12746499 (-) | True | XLOC_023341 |
| TCONS_00047166 | lncRNA | upstream | 7761 | 13355278 ~ 13357652 (-) | True | XLOC_023352 |
| TCONS_00047167 | lncRNA | upstream | 1094437 | 14441954 ~ 14445136 (-) | True | XLOC_023356 |
| TCONS_00047168 | lncRNA | upstream | 1657995 | 15005512 ~ 15032354 (-) | True | XLOC_023360 |
| TCONS_00046849 | lncRNA | upstream | 2397553 | 15745070 ~ 15749414 (-) | True | XLOC_023364 |
| TCONS_00047169 | lncRNA | upstream | 2798986 | 16146503 ~ 16147518 (-) | True | XLOC_023366 |
| TCONS_00046175 | mRNA | downstream | 68221 | 13251480 ~ 13272843 (-) | False | XLOC_023350 |
| TCONS_00046177 | mRNA | downstream | 68222 | 13255409 ~ 13272842 (-) | True | XLOC_023350 |
| TCONS_00046171 | mRNA | downstream | 338071 | 12970119 ~ 13002993 (-) | True | XLOC_023347 |
| TCONS_00046173 | mRNA | downstream | 357235 | 12975186 ~ 12983829 (-) | False | XLOC_023346 |
| TCONS_00046170 | mRNA | downstream | 359602 | 12963119 ~ 12981462 (-) | False | XLOC_023346 |
| TCONS_00046182 | mRNA | upstream | 14329 | 13361846 ~ 13364311 (-) | False | XLOC_023353 |
| TCONS_00046183 | mRNA | upstream | 14755 | 13362272 ~ 13566015 (-) | True | XLOC_023353 |
| TCONS_00046185 | mRNA | upstream | 854810 | 14202327 ~ 14212521 (-) | False | XLOC_023355 |
| TCONS_00046186 | mRNA | upstream | 854813 | 14202330 ~ 14209202 (-) | True | XLOC_023355 |
| TCONS_00046188 | mRNA | upstream | 1211811 | 14559328 ~ 14577544 (-) | False | XLOC_023358 |
| TCONS_00046161 | other | downstream | 1184420 | 12155107 ~ 12156644 (-) | True | XLOC_023338 |
| TCONS_00046151 | other | downstream | 1929123 | 11411822 ~ 11411941 (-) | True | XLOC_023331 |
| TCONS_00046142 | other | downstream | 2292504 | 11048446 ~ 11048560 (-) | True | XLOC_023326 |
| TCONS_00046141 | other | downstream | 2329513 | 11011436 ~ 11011551 (-) | True | XLOC_023325 |
| TCONS_00046140 | other | downstream | 2392919 | 10948064 ~ 10948145 (-) | True | XLOC_023324 |
| TCONS_00046184 | other | upstream | 262081 | 13609598 ~ 13609714 (-) | True | XLOC_023354 |
| TCONS_00046187 | other | upstream | 1186325 | 14533842 ~ 14536411 (-) | True | XLOC_023357 |
| TCONS_00046200 | other | upstream | 1866354 | 15213871 ~ 15213985 (-) | True | XLOC_023362 |
| TCONS_00046203 | other | upstream | 2726572 | 16074089 ~ 16075115 (-) | True | XLOC_023365 |
| TCONS_00046204 | other | upstream | 3207352 | 16554869 ~ 16554983 (-) | True | XLOC_023368 |
