RNA id: XM_036949663.1


Basic Information

Item Value
RNA id XM_036949663.1
length 3926
RNA type mRNA
GC content 0.54
exon number 18
gene id LOC110495135
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 29524398 ~ 29683158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAAAAGCACTCGCGTGGAAAGGAGGTTGAGTAAAGCCCTCAAAGGATACGGGAGGACAAACGCTCTAAGGCGCATTAGTTCATTGCTTTCTTCGGAGAGGAAAGGCACCCAATAGACTTCGTTCTCTGAGTGTACATATTGGGAACAGGGATTTTGGAGACCAAGTTGCACTGATTCGGTCTAAATTTTCTTCCACATCTGCTTTGAGGAATGCTGCCCTAATACGCGGCAGACCATATCGTTCCAGTTACCCGGACAATCTGCAGCGACTAAAAtcgggattttttttttaaatttgcaaAGTGACATAATGCAATCTAAAACGTAGGATTAAAAACACAGACTTCGCTCAGATTTCAAGAAGTCAGAACTCTCGTTTAAGATACTGTTCGCGGATTCAATTAAACGAAAACTTATGGATAAAATCTCACATCTGACTATTTTCTGGGAGTTGAACCCCTAAAACGTTGAATCCCTAAAACGCAGGCGGCGTGCAGCAGTTTCAGCACCTAGTTGAGGCCCAGGTTGCGAGGTTAACGATGTCGGGGGTCGCTTGTTTGGTTGCGTGTTTTGGGAAATGATTACTGGCAACATCGACGGTAAAATAATGGTTAGAAGATGGCTTGTGACGTTCAAACCTTTCAGgATATTTGTGGTGGGGATCGGCTTCTTCAGCCTGTGTTTTCTAATGACCTCCCTGGGGGGCCAGTTCTCAGCCAAGAGGCTTGGGGACTCCCCCTTCACCATCCGGACAGAAGtgaTGGGGGGAGTGGAGTCTCGTGGGGTGCTTAGGAAGATCAGTGACATGCTGGAGGTGATCCTGAAGAGGATGGACAGCCTCTCCAAACTGGACAACAGCACCACCAGCGACACCCGCCGTCTGAATGAACTCAGCTCGGCCATCAACAGgttccAGCCAGCAGGCCTGGTAGAGAGGATCCAGGCTATAGCTCAGAACGTGTCCAACATGGCGGTCAGAGTGGAACAGATCCTCCAGAACAGCATGGCCGCCGGCAGAGCAGTGAGAGACGGCTCCTCAGGCCAATGTGAGGTACCCAGAGACCCCCACTACCCAGACTGCCCTGGAAAAGTCGATTGGATGCGTGCCCGCTGGACGTCAGACCCCTGCTATGCCTTCTACGGGGTGGACGGCTCCGACTGCTCCTTCCTTATCTACCTGAGCGAGGTGGAGTGGTTCTGCCCCCCTCTGGCCTGGAGGAACCACAGCAGCCCCCCcaccgtccacacacacacacaccagaccaccaccaccaagagacagGCTGCATTCCGCACAGACCTGTCATCTCTGCTAGACCAGGTTGGCACGGGCAAAGAGTCCCTGAGCTTCATGAAGCGCCGTATGAGGAGGCTGGCATCACAGTGGGGCACGGCTGCCCAGCGCCTCCACTCCAAGCTGCGCCAACGCTGGAGGGAACAGAAGAAGATCCTGGTGCACGTGGGCTTCCTGACAGAGGAGTCAGGGGATGTGTTCAGCCCCAAGGTCCTGAAGGGAGGTCCCCTGGGGGAGATGGTCCAGTGGGCCGACATCCTCACAGCCCTCCATGTTCTGGGACACAACCTCAAGATCTCCATGTCTGTTAAGGAACTGCAGGGATTTCTCGGGGTGCCCCCAGGCAGAGGGAGCTGCCCCTTGACAGGACCTCTGCCCTTTGACCTCATCTACACAGACTACCACGGCATGCAGCAGATGAAGCAGCACATGGGGCTTTCGCTCAAGAGACACAAGTGCCACATCCGTGTGATTGACACCTTCGGGACAGAGCCGGCCTACAACCACGAGGACTACGCCACCCTGCACGGCTACAGGACCAACTGGGGCTACTGGAACCTCAACTCCAGACAGTACATGACCATGTTCCcccacACTCCGGACAACTCGTTCATGGGCTTTGTGTCTGAGGAGCTGAACGACACAGAGAAGAGGAGCATCATGCAGAACAAGGTCAACAACATGGCTGTGGTTTACGGCAAGGAGGCCAGCATGTGGAAGCTCCAGCAGGGTAAGGAGGGTTTCCTCCAGATCCTCCACAGGTACATGGAAGTCCACGGGACGGTGTACTACGAGACCCAGCGCCCCCCCGAGGTGCCTGCCTACGTCAAGAACCACGGCCTGCTGCCCCAGCACGAGCTGCAGACGCTGCTCCGCAAGGCCAagCTCTTCATCGGGTTTGGTTTCCCCTACGAAGGGCCCGCCCCTCTGGAGGCCATAGCCAATGGGTGCATCTATTTGCAGCCCAAGTTCCACCCACCGCACAGCTCGCTCAATCACGAGTTCTTCAGAGGCAAGCCCACGTCTAGAGAGGTGTCATCCCAGCACCCGTATGCGGAGCAGTACATCGGGCGGCCCCACGTCATGACAGTAGACTACAACAACTCCCAGGAGTTTGACTCCGCCATCAGAGAGATCATGAGTACCAAGgTCGAGCCATACCTACCATATGAGTACACCTGCGAGGGAATGCTGGAGAGGGTACACGCCTACATACAGCATCAGgaCTTCTGTACCCCCGAGGCCCCTTTCCCTCCGgccaactcctcctcctccaagctGGGGATTAGTAGTCTAGGTAGCCCTGGGCCTCAATTTGTCCTGCTGCCCAACTCCAGTGCCCTAACCTGGGCCCCCGACGCCAGCGCCCCCTCTGCCTGGCCCCCTCTCAGCTCTCTGAGGCTGCTGGCGTCCCAGGAGGGCCAGTCGTGTGTTGAGGCCTGCCAGCGGGCCAACCTGGTGTGTGAGCCCGCGCTGTTCCGCTTCGTCAACAACAAGGAGGCCCTGCGCGGGTTAGAGGTGCAGTGTGAGGTGGTGGAGGCGGAGGTCAACCACGTGTTCCCGGCCTTCTCCGTCCTGCGCCGGGAGTGCAGCCTCCAGAAGGACCCCCTCCTCTACAGCTGTGCCGGCCACAGCCCCAAGTACCACCGCCTCTGCCCCTGCCGGGACTACCGCCGCGGCCAGGTTGCCCTCTGCCGAGACTGCTTATGAGGaggggccaggagtttttccaatGAACGCCTGACCCGGCaatgtggctaggaaaaactccaggcgCTCTAGTTATAGCCTATGAATTGTAGACTATAAACTATGGACTATAAGCTCAACCGGCCCTGGTTATAATGCTAGGAGAGGGGCTGGCTAAAACTGGGACCCCCCCCCAACTGGAAGACTTGGTTCAAAGCTTCCCACTGAGCTTGAGTGGGTTGTTGTCCCATAGTCACCCCCCCTCCTTAATTTCTTGGTTTCTAAATTGACTAATATGTTTCTGATATGAGCCTATGGATGGTTTGCCTCAAAGCTCCTCACTGGCCTAAGAGAGATGTGCTGGACTATACTGCAACAAGTATATCCGTTCACCATGTGGCCACAGGAAAACACAGTAATCCACAATAGGGAAAAGGCTATATCAccatctagctagctacctaactaaTACCTAGAGGAGACCACTGACCGGAAGATCATTGATTTGCTGCTACAATATCAATAATTGGACTTTAACCCTCCAAGACCAGGGAGTTAAGAGAGCAATCGACCTGGGGAAGAAAACAGTTAACACAATGTGTGTCAAACTCCTAGAAAAAGTGACCTTTGAGTGGAATTCCACCTTTGGGTCAATaaccctctcacctcctctctttgGCGTTGTGCTTTGGCAATAGATGATGGACACTCAGACTCTCTCCTTTTAAAGATGAACTCTTTCTTTTGTGCGACTAAGATAACCCTGGCTGCCAACGTAGTCAATGCAATCATCTCTGTTGCGCTAAAATGGACTAAAACAGATGAAAGATTATTTTTTAATAAAGTGAACGTTTTGAGCTCTGCTACTGCGAGAACAGAGGATTTTTAAGAACCTTTCGGTGGTTTTGTGACGGAAATAAAAACGGAAAGTTGAAAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1644757 lncRNA downstream 2895 29520977 ~ 29521503 (-) True G1436638
TU1644735 lncRNA downstream 42635 29481304 ~ 29481763 (-) True G1436616
TU1644724 lncRNA downstream 62937 29461140 ~ 29461461 (-) True G1436605
TU1644669 lncRNA downstream 91725 29424001 ~ 29432673 (-) False LOC118940393
TU1644852 lncRNA upstream 2533 29685691 ~ 29685960 (-) True G1436731
TU1644863 lncRNA upstream 15150 29698308 ~ 29698534 (-) True G1436742
TU1644868 lncRNA upstream 19087 29702245 ~ 29702518 (-) True G1436747
TU1644870 lncRNA upstream 22595 29705753 ~ 29710169 (-) True G1436749
TU1644873 lncRNA upstream 29531 29712689 ~ 29712900 (-) True G1436752
XM_036949661.1 mRNA downstream 86998 29435134 ~ 29437400 (-) False LOC110493664
XM_036949662.1 mRNA downstream 86998 29435134 ~ 29437400 (-) True LOC110493664
XR_005036944.1 mRNA downstream 91513 29423991 ~ 29432885 (-) False LOC118940393
XR_005036943.1 mRNA downstream 91519 29423991 ~ 29432879 (-) False LOC118940393
XM_036949660.1 mRNA downstream 102070 29368440 ~ 29422328 (-) False LOC110493663
XM_036949666.1 mRNA upstream 140881 29824039 ~ 29849081 (-) False LOC110493666
XM_036949667.1 mRNA upstream 140881 29824039 ~ 29849081 (-) False LOC110493666
XM_036949668.1 mRNA upstream 140881 29824039 ~ 29849081 (-) True LOC110493666
XM_021568066.2 mRNA upstream 166103 29849261 ~ 29852422 (-) False si:dkey-45d16.4
XM_036949673.1 mRNA upstream 247763 29930921 ~ 29979178 (-) False LOC110495137
TU1643452 other downstream 976842 28547273 ~ 28547556 (-) True G1435467
TU1643280 other downstream 1157157 28366454 ~ 28367241 (-) True LOC110495156
TU1643279 other downstream 1195521 28328130 ~ 28328877 (-) True LOC110493621
TU1643142 other downstream 1323716 28189019 ~ 28200682 (-) True G1435199
TU1643202 other downstream 1341837 28181042 ~ 28182561 (-) True G1435257
TU1645492 other upstream 255168 29938326 ~ 29943730 (-) True LOC110495137
TU1645583 other upstream 367444 30050602 ~ 30114123 (-) True G1437411
TU1645686 other upstream 558292 30241450 ~ 30242963 (-) False G1437507
TU1645805 other upstream 784165 30467323 ~ 30468772 (-) True G1437609
TU1646535 other upstream 1049031 30732189 ~ 30735586 (-) True LOC110493700

Expression Profile