RNA id: TCONS_00046185


Basic Information

Item Value
RNA id TCONS_00046185
length 1439
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_023355
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14202327 ~ 14212521 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAACAGAAGAATGGGAAACCTGGTGACCAGTTTTACCAGGTTATCAAAAACATGAAGAGAATGAATGAAGCAGCTTTTTCTATCAACAGGAAGCAAACATCTGTTTACATTTTCAGCCTTATCAAGCACCATTCTCCATCAGCGTTTTTCAAATGCCATAAATCACAACCATGGCAGCTTTTAGAGATGGATTTCGGTGGCTATGCACCCTTTTtggattcattttttatttaggaGACATTGGTTCCGACATTTTGTTGTCTGTGCAGTATTTTAGACGTGGACATGTCACATGGGCTGCACTGACTCTTACGTTTGTTCTGGTCGCATCTGTGACCGTACAGACATTCAGCTATGCGTGGTTCAAAGACGACAACAAGGAGAGTCAAACAAATGTCAAGTGTATTCCCACTTGCTATCTGATCGGGATACATTTACTGCAGATAGGCATTTGTTCAAGGTATCTCCGATTCCTAAAGAGGAAATTCAAAGCCCTTTGTTCAAATCAGACAAGAGAGGAAAAGGACTATGACTCTGGGCTGGCTGCAGATCTCAGCATGCTCCGTATGTTTGAGACGTTTCTGGAGAGTGTTCCTCAACTCACTCTGCAGACCTACATCATACTGGAGCACAACCATCGCTCCAATCTGCAATACATCAGCATGGCCATGTCTTTCGTCACTATAGCCTGGTCAACGGTGGATTATCGACGCTGTTTACGGTCCTCTTTAAGGGATACAAATGAAATGCCATCTGGAAGCCCAACAGCCATTTACCTGTTCTACAAAATCTTCACCATCACTCCTCGAATCCTCAGCCTGACGCTCTTCCTCATACTTTCCTACTTCACCATTCCAGCAATAGCGCTTGTATGGCTGGTGGGAACCACCTGGGCATTTGTGGAGAAGACGAATTTCTGTACTTCACGAGTCCTTGAATGGATCTATCGAGCCGTAGTTGGAGTTAttctcatttttacattttttaacattagGGGACAGAACACTaaagtccccatgactgtttatTACATATTCAGCGTAACTGAAAATCTTTCTGCGCCCATATTGTTGGCTCTGCTCAAACCGGAGTCTGAAGGGACTGACTATTTCCTGCccataatactttttattttattttctaattcaATAGGGCTGATTTTTCTGGCGGTTTATTACAGCCGTCTTCATCATCATGTGCATCCCCCTGTCCCTCCGTCTGAAAGGATAGCAGATGAAGTGGATGGAGGTCCTCAAGTTAAGAATGTACAAAAAATGACacgttttaatcattttttacaaatataattatCTTGCTCAAAAAAATTGAATTGACTTACTAAATGTCAGTAGCACTTAATTTAACAATACAGTTTTGCATACTATTAACATTACACGTCATTACATAAACTGGATAATAAACTCACAACTCCTAAA

Function

GO:

id name namespace
GO:0070782 phosphatidylserine exposure on apoptotic cell surface biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:1902742 apoptotic process involved in development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-6224 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human XKR9 (XK related 9).

Ensembl:

ensembl_id ENSDART00000130825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047166 lncRNA downstream 844675 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00046181 lncRNA downstream 854810 13341064 ~ 13347517 (-) True XLOC_023351
TCONS_00046176 lncRNA downstream 947295 13252312 ~ 13255032 (-) False XLOC_023350
TCONS_00047165 lncRNA downstream 956442 13224248 ~ 13245885 (-) True XLOC_023349
TCONS_00047164 lncRNA downstream 1076854 13058667 ~ 13125473 (-) True XLOC_023348
TCONS_00047167 lncRNA upstream 229433 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047168 lncRNA upstream 792991 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00046849 lncRNA upstream 1532549 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047169 lncRNA upstream 1933982 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046850 lncRNA upstream 1992267 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00046183 mRNA downstream 636312 13362272 ~ 13566015 (-) True XLOC_023353
TCONS_00046182 mRNA downstream 838016 13361846 ~ 13364311 (-) False XLOC_023353
TCONS_00046178 mRNA downstream 852525 13336327 ~ 13349802 (-) False XLOC_023351
TCONS_00046180 mRNA downstream 852855 13338123 ~ 13349472 (-) False XLOC_023351
TCONS_00046179 mRNA downstream 852863 13337213 ~ 13349464 (-) False XLOC_023351
TCONS_00046188 mRNA upstream 346807 14559328 ~ 14577544 (-) False XLOC_023358
TCONS_00046189 mRNA upstream 346821 14559342 ~ 14577559 (-) False XLOC_023358
TCONS_00046190 mRNA upstream 347361 14559882 ~ 14576812 (-) False XLOC_023358
TCONS_00046191 mRNA upstream 354088 14566609 ~ 14577225 (-) True XLOC_023358
TCONS_00046192 mRNA upstream 411310 14623831 ~ 14712427 (-) False XLOC_023359
TCONS_00046184 other downstream 592613 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046161 other downstream 2045683 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046151 other downstream 2790386 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046142 other downstream 3153767 11048446 ~ 11048560 (-) True XLOC_023326
TCONS_00046141 other downstream 3190776 11011436 ~ 11011551 (-) True XLOC_023325
TCONS_00046187 other upstream 321321 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046200 other upstream 1001350 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046203 other upstream 1861568 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046204 other upstream 2342348 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046210 other upstream 2684287 16896808 ~ 16900124 (-) False XLOC_023369

Expression Profile

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