RNA id: TCONS_00046187


Basic Information

Item Value
RNA id TCONS_00046187
length 833
RNA type processed_transcript
GC content 0.56
exon number 2
gene id XLOC_023357
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14533842 ~ 14536411 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCACACAACTGTCTATAAAGTTATCAATCCTGATCATCGCGCTACAAACCTCTGCACAAATCTACCGTCGACTGAGTTTCACCTGTTTTCTACTTTGGGAAGTTGTTTTGGAGTTCGCTATGACGCTGCGGCGCTCGAGTAGGACCAGGACTCTTCCTGGACACCTCAGAGACTTCTTGCTGGAGCGCGTCTCTTCCGTTGAGGAGAGCGCAGCAGCGGCCAGGCCAGACACCTGCAGCTGCATGTCGGACACTTCACTGGAGGAGAAACACCTGAGGAACGCAGCTGTCCTTCCTGTCCTCCGTCCCGCAGCATCAGTCTCCTTGGCTGGTGAGTGTCCGCAGGAGGAGCCGCTCTCCATCCACGGCCGGAGTGTGCAAGAATATCAGCACCTCTACCACAGTGTGATGGGTTCCACCATGAAGAGACGCCGAGGCCGTTACAACCTTCAGTGGGGCTtggagatcaagcagcggctgtgggatcAGCTGGACCGGCCTGTACTGCTGGAGACCGTGCAGCCTGATGGACGTGTGGTCATCACGGAGAGCAGGTCTGGGCCCAGCATCCCTCCTCAAATCATGGTGGACATCAGCAAAGAGCCGCTGCCCAAGGAGCCCCGAAAGAAGAAGCCCAGGCACTGAGTCATCCTATATAGTGCCAGATGGAGGATTAAGGGCATGAAGAAGTTCCTTAGACAGGAAGTGGAGAGCAGTACTTTGGGAagccctgctgctgctgctgctgatgatgagCTTCTAGAGCACTGGCGGTCTAGATAGCGGATTTCTGCCCACCTGCACTCAACTCAACACAGATGCAGCACCAGGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000132552

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047167 lncRNA downstream 88706 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047166 lncRNA downstream 1176190 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00046181 lncRNA downstream 1186325 13341064 ~ 13347517 (-) True XLOC_023351
TCONS_00046176 lncRNA downstream 1278810 13252312 ~ 13255032 (-) False XLOC_023350
TCONS_00047165 lncRNA downstream 1287957 13224248 ~ 13245885 (-) True XLOC_023349
TCONS_00047168 lncRNA upstream 469101 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00046849 lncRNA upstream 1208659 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047169 lncRNA upstream 1610092 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046850 lncRNA upstream 1668377 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047170 lncRNA upstream 2587999 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00046185 mRNA downstream 321321 14202327 ~ 14212521 (-) False XLOC_023355
TCONS_00046186 mRNA downstream 324640 14202330 ~ 14209202 (-) True XLOC_023355
TCONS_00046183 mRNA downstream 967827 13362272 ~ 13566015 (-) True XLOC_023353
TCONS_00046182 mRNA downstream 1169531 13361846 ~ 13364311 (-) False XLOC_023353
TCONS_00046178 mRNA downstream 1184040 13336327 ~ 13349802 (-) False XLOC_023351
TCONS_00046188 mRNA upstream 22917 14559328 ~ 14577544 (-) False XLOC_023358
TCONS_00046189 mRNA upstream 22931 14559342 ~ 14577559 (-) False XLOC_023358
TCONS_00046190 mRNA upstream 23471 14559882 ~ 14576812 (-) False XLOC_023358
TCONS_00046191 mRNA upstream 30198 14566609 ~ 14577225 (-) True XLOC_023358
TCONS_00046192 mRNA upstream 87420 14623831 ~ 14712427 (-) False XLOC_023359
TCONS_00046184 other downstream 924128 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046161 other downstream 2377198 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046151 other downstream 3121901 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046142 other downstream 3485282 11048446 ~ 11048560 (-) True XLOC_023326
TCONS_00046141 other downstream 3522291 11011436 ~ 11011551 (-) True XLOC_023325
TCONS_00046200 other upstream 677460 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046203 other upstream 1537678 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046204 other upstream 2018458 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046210 other upstream 2360397 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046216 other upstream 2434693 16971104 ~ 16979728 (-) True XLOC_023371

Expression Profile

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