RNA id: TU1647841


Basic Information

Item Value
RNA id TU1647841
length 2245
RNA type TUCP
GC content 0.42
exon number 5
gene id ero1b
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 32352949 ~ 32378308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAAATAACCGTCTATTCTCGTCTCCCAGAGCTTTCCCAATGCACTTTGACGAGAAGTCCATGTTTGCTGGGCAGAAGATCGAAGCAAAAACGTTGAAGGAGGAATTCCGGCTACATTTTAAAAACATCTCCCGGATCATGGACTGTGTGGGCTGCAGTAAATGTCGACTGTGGGGGAAGCTACAGACCCAAGGGCTGGGCACAGCGTTGAAGATCCTTTTCTCTGAGAAGGAGATCAAGAACCTGCCGGAACACAGCCCCTCTAAGGGCTTCCAGCTGACACGCCAGGAGATAGTGGCCTTGCTCAACGGCTTTGGGAGGCTCTCCACAAGCATCCACCAGCTCCATAGTTTCCGTGCCTTGCTGAAGGAGAAGAGGTAACACCCTTCAACAGCACTACCACCTCCTAGCCACCAGGTGGAGCAAGCCCAGAGGGAACTGCAATAGTCTTAATCCTCCCCAGAATAAGATCAAGTTCAGGGACTTCAGGATAGACACTGaacccccatcccctcctccctctatgtataactctccttctctccccttccttctAAATCTAGGTCTCGTCTTTCCATAAAGCATAGCGCTCAATGTGAGAAATCTGTACCTCCATTTCgttgtttttaaatgtttgtttttactATTGTGGGTGAAAGTGTTCACCATTTCAGGCATACTAGTTGTGAGCTAGacccatcagtgtgtgtgtttttggtgtgtgtttgtgagagggaGTACTTGTTTGTTGGTGATCGCCAGTTGCAGCTAAATGATACCGAAAATTAGGATTCATTCCATACTTTTACGACCACAAACTTGATAAGCATACTGCGTTTTGCTATCCTAGAGGTGTAACCTTTTTTTTCTGTGATTGAGTGCCTGTATTGAACGAACGTCTATGGAAGCGACTGTGTCTGCTGTTGCTTTTGTCTGTGCATTTAGCTGTTTAGGGGTGTTTTTAACATCTCCACGTGGCAATCCAGTCTTTCTGCGCATCACAAATGTATTATATAAAGCCTCGTTTAAATGTGAAAAAGGAACAATTTGCGGATTGTGCATCTGTTGACAACGATAAGCTTGCGTCACTTCTCTCATACCTGTTCTATTTGGTGGCAGAACGGTTCCTGGTGTTTTATTCTTATCCTATTGTTTTATTGGTTTTATGAAAGACGAGACTTGCCAGGGTGACGGCAATCCCAAATGTGTAAGAGGTGTTTTCATGGCAATGTAAAAGCAAAACCAGTATTTGTTTCATAGTTCACTTAAATAAGCTGTCATCCTGTGAAACTGCCATGTTGGAGAAGAGTACTGTTAAAGTATAATGGAGAATGCAGCCAATGGTGTGAAAAGAAGCTAATCGAAACGAGCAGTGGGATTTGTTCTCCCATGATGGTCAAGTTCACTGTGGTGTCTTGGTGAGCTTGCCGTGTAAATCAATTCAAAATGGATACGCGTAATGGCATTTAACGTCGCGCAACCTTTTTAAACCGTCATACCCTTTAGGgctgggacgatactttaacttctttaggaaaacagccctaatgttccCCACACTATACGTGTTTTATTTCTGTCTGAAGTAGGTATTTCACCATGTGGACCAAAGATTTTACGTTGCCTTTTATTTTCTATCATGTCAAAGCACCTTTTGAGTTTTTCCACCATATACGTTTTTAGTTTGTGCATCCTCGCCCCCTTGAGTAACATTAGTTAGAAAATGTCACAAGCAAAGATTGCCTTATGTGCAAAGATCAAACAATCGGTAGCCAGACAATACCTGTGTAATACTTTGTAACACGTGTTTTGTAAAAGAAAAATCTCTATCCAATCAAACAAAGGTAGACATGGGGTCCAGTAAGTAGGAATTGAGTCAGTGGTAGCTGTCGGATGCTTATGCTAACGTAAATAGCAACGCTAATGTCGCCTTGAATGTGAACGCTATGGAGATTGAACAAGCTGTTCCTACTTGGCTTAAATTGAAGGATAAATAGACAAGATAAAATATTCTTTCTTGGATGAAATCCACCATTTCGTCTCCAATGATCTCTACGCTCTTCTGCTAGCTCTGCCTTTGTAACATATTCAGATGACCCAGGAAGTTGTACTATTTGTAAAAGGAAAATTGCTGAACATTTTTCAAAtctatatgaatatatatatatagttgcaCCTGTATTGATGTGTATTCTTATTTGATTATATTTATTTGAACAGAGGAATAAAAATGTCTGGTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1647852 lncRNA upstream 21386 32351977 ~ 32352229 (+) True G1439440
TU1647850 lncRNA upstream 24300 32348953 ~ 32349315 (+) True G1439438
TU1647812 lncRNA upstream 92157 32274966 ~ 32281458 (+) True G1439402
TU1647767 lncRNA upstream 162814 32210573 ~ 32210801 (+) True G1439367
TU1647740 lncRNA upstream 191603 32179767 ~ 32182012 (+) False G1439346
TU1648175 lncRNA downstream 66030 32444338 ~ 32444788 (+) True G1439706
TU1648194 lncRNA downstream 102279 32480587 ~ 32482128 (+) True G1439717
TU1648193 lncRNA downstream 109329 32487637 ~ 32491941 (+) True G1439716
TU1648180 lncRNA downstream 183865 32562173 ~ 32605872 (+) False rbm34
TU1648186 lncRNA downstream 183865 32562173 ~ 32662021 (+) False rbm34
XM_021568192.2 mRNA upstream 33356 32330091 ~ 32340259 (+) True LOC110493741
XM_021568183.2 mRNA upstream 60976 32281681 ~ 32312639 (+) False LOC110493739
XM_021568184.2 mRNA upstream 60976 32281681 ~ 32312639 (+) False LOC110493739
XM_021568185.2 mRNA upstream 60976 32281681 ~ 32312639 (+) False LOC110493739
XM_021568186.2 mRNA upstream 60976 32281681 ~ 32312639 (+) False LOC110493739
XM_036949743.1 mRNA downstream 44698 32423006 ~ 32425262 (+) True LOC110495166
XM_021567457.2 mRNA downstream 61427 32439735 ~ 32441792 (+) True LOC110493168
XM_036949744.1 mRNA downstream 69187 32447495 ~ 32478576 (+) True LOC110493746
XM_036949746.1 mRNA downstream 120738 32499046 ~ 32560510 (+) True LOC110493748
XM_021568205.2 mRNA downstream 276122 32654430 ~ 32661762 (+) False rbm34
TU1647620 other upstream 397394 31973440 ~ 31976221 (+) True LOC110493164
TU1647270 other upstream 466117 31906522 ~ 31907498 (+) True G1438941
TU1647204 other upstream 668451 31702494 ~ 31705164 (+) True G1438880
TU1646135 other upstream 1440031 30927247 ~ 30933584 (+) False G1437911
TU1646137 other upstream 1440031 30927247 ~ 30933584 (+) True G1437911
TU1648185 other downstream 221928 32600236 ~ 32610341 (+) True rbm34
TU1648454 other downstream 334552 32712860 ~ 32766707 (+) True G1439962
TU1648562 other downstream 418790 32797098 ~ 32797432 (+) True G1440066
TU1648662 other downstream 573492 32951800 ~ 32956057 (+) True G1440162
TU1649436 other downstream 1145891 33524199 ~ 33524534 (+) True G1440890

Expression Profile