RNA id: XM_036949758.1


Basic Information

Item Value
RNA id XM_036949758.1
length 5057
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC110493770
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34040261 ~ 34121223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTCGATCCCTCTCTCGCCACCTGGCGTTGCTACTGTCATGTTCTTTCCTTTTACAGCGTTACGAAGGAATATATTTTTTTGGCTTGCAtgtgttctataaaatatatgCCATGAACATTGGTTGTACCCGCGTAGGCTATCCTGCATGAATCCTCGTCTTTTGGGAGGGAGAATGAAGGTCGCTCCTGTGTAGGGTGTTCCTTTTACTACTATTCCCCCATCTCGCGTTCCTAGTGTGTGTCAGCCCATCTATCAGGGTGGATCAATGCTGGATTCTCTGCTTCACACAAACTCCTATCCGTTCTCTCGGCCCGCTACACTCGCTTGCCTCGTACCCGGGGGCGCATCTATCAGCATAGATAGCCCTGCGCTGGCTCCAAGCGGGCCTTGAAGTAGATATGCTGTAGTTTGGAATACTGCGGTTTGGACGGTCGGGTTGGAAATGCCGGTGgtgtaaaaaaaagtataattaaTATTTCCCTCGTCGCACTGTTCTCGGCGGCTGCCAAGCTCGGTGCTTAGCGGCCTGTACACACAAAATGTCGACCAGAACGCCATTGCCCACTGTGAATGAGCGTGATACAGAGAATCACACTTCTGTGGAGGGCTACCAGGAGCCCCCGGCCCCGCCGGCTAAGTCGGGGAGTCGGCACAGCCTGCCGAGATGTCGGAACTCTGTGGCGTCCACGACAGAGGAGCAGCCACACATCGGGAACTACCGGCTGCTCAAGACCATTGGCAAGGGGAACTTTGCCAAAGTCAAGCTGGCCCGGCATATACTCACAGGACGAGAGGTTGCCGTGAAGATAATAGACAAAACGCAGTTGAACCCCACTAGTCTACAGAAGCTCTTTCGTGAAGTCAGGATCATGAAGATCTTGAATCACCCCAATATTGtTAAATTGTTTGAAGTCATTGAGACTGAGAAGACACTTTATTTGATAATGGAGTACGCCAGTGGTGGTGAGGTATTTGACTACTTAGTTGCACATGGAAGGATGAAGGAAAAGGAGGCTCGGGCCAAGTTTCGCCAGattGTCTCTGCAGTGCAGTATTGCCATCAGAAGAGGATCGTCCACAGGGATCTCAAGGCTGAGAACCTACTCCTGGACGCAGACATGAACATCAAGATTGCAGACTTCGGCTTTAGCAACGAGTTTACCCTGGGCAGTAAGCTGGACACGTTCTGCGGCTCCCCGCCCTACGCCGCCCCGGAGCTGTTCCAGGGGAAGAAGTATGATGGGCCCGAGGTGGACGTCTGGAGCTTGGGGGTCATACTGTACACGCTTGTCAGCGGTTCACTGCCCTTTGACGGACAGAATCTGAAGGAGCTGAGAGAACGCGTGCTGAGAGGGAAGTATCGTATTCCTTTCTACATGTCTACAGACTGTGAAAACCTGCTGAAGAAACTGTTGGTGCTCAACCCTGGCAAACGGAGCAGTCTGGAGCAAATCATGAGAGACCGCTGGATGAACGTGGGCCATGAGGAGGAGGAGCTGAAGCCCCATCAGGAACCGGAACCCGACTGGAACGACACCAAACGGATAGAACTGATGATAACCATGGGCTTCCCCAAAGAGGACATCACAGATGCGTTAACGGGACAGAAGTACGACGAGACCATGGCCACTTACCTCCTTTTGGGCAGGAAACCAGCCGAGTTTGAGGGGAGCGAGTCGCTGTCCAATAGCAACCTGTGTCAAAGGTCACGGCCCAGCAGCGAGGCCAACAACAGTTCCAGCCAATCGCCAGCCCACTCCAAGGTCACACGCAGCATATCGGCCAACCAGAAGCAGCGCCGCTTCAGTGACCATGTGGCgccctctatccccccttctaTGTCCTACACCAAGCGGGTGCAGGCCAACAGTGTGGAGAGCGACAAGGGCGATGCCGCCCACAAGCTTGGCACGGCCGGTTCCAAGACCGACGTGCCCACCTCGCCGCTGGTGGCACAGGAGAGGAAGAAGTCATCCACCGCCTCAGGGAACAGTAACGCTATGACCAGGAGGAACACGTATGTGTGTGAGCGGTCAAGCACAGATCACTACACGGCGATTCCCAATGGCAAGGACAGCAGtctgactgAGATGTCAGGCTCGGCCAGTGGCTCCTCACCATCGCCAGGGGCAACCTCAGCTGTCCCTTCCACTCGTCCGCGTCACGTCAAGTCCATGTCGGCATCGGGCCACCCTATCAAGTCCCCACTGCCTCCCATAGACGACAACGCGGAGTACAAGGGCCCCCCCACGGCCTCGCCGTCGGCGCACAGCATCAGCAGCAGCACGGCCGCCACGCCGCCCGACCGCACGCGCTTCCCCCGCGGCTCCTCCAGCCGCTCCACCTTCCACGGTGCCCAACTTCGCGACCGCCGCTCGGCCACCTACAACGGTCCACCCGCCTCTCCCACGCTCTCCCATGACACGGGGGCTCTGTCCCAGGCGCGCAGGGGCACCTCCACGGGCATCATCAGCAAGATCACCTCCAAGTTTGTCCGCAGaactaTGTCTTTCAGGGCTGGCCGGAGGGCCACGGTTGAAGGAGAGGCCAGTGGCAGTACAGACCCCCCAAGGAGCGCATCAGGGGAACCCAAGGAGGACGGTTCCCGGGACTCCAAACCCCGTTCACTGCGCTTCACCTGGAGCATGAAGACCACCTCGTCCATGGAGCCCGGCGACATGATGCGCGAGATCCGGAAGGTCCTGGACGCAAACAACTGCGACTACGAGCAGCGCGAGCGCTTCATGCTCTTCTGCGTGCACGGCGACGCCCGCCAGGACAGCCTGGTCCAATGGGAGATGGAGGTGTGCAAGCTGCCACGCCTCTCACTCAACGGTGTGCGCTTCAAGCGGATCTCAGGCACGTCCATCGCCTTCAAGAATATCGCGTCCAAAGTGGCTAACGAGCTCAAGCTGTGAAAAGTGACTTTTGGGAAGACTAAACAAACTAAAGAGAATTAACATATGACATTGTAAATGGAGGGGGCAGAGGACATAATCCTGGTGTTCCTTGAGTTTGCGGGGCGCTCCAAGTGTCGGGCCCAAGAGAGTTTACTGCTATTCGAGGCTACTGCCGTATTGCTTGGTTGAAACGACACATAGAGAAAATATACTTCCATTTTCCCTCCCCAAGGCAAACCCCTGTATTCCAAAATTGTTGTTAATAACGAGAGGTGAGAACTGACCATTGCAATAATATGAAAACATTTGTATCAATGGGCCGCAAAATTTCAATTCCATTGCTAAACTACCATTTTAAAGGGGGTTGGAAGAACAGACTGCAAAGCTACTTTTTCCACATGTACAGTAAAATAGAGAATGTTTTGAGTTGTATTGTTCATAGAGTTGTATAAAACAGGACTCTTCAGCATAATGTCTGCAGGTATTGTATAGTCTTGAGTTGCTGTACAGAAAGTGTGTTTAAATGTGTCATACTgtgttttttcttttcttttcattTGGAGTTCTCTTTCCTTCTATTGTTGACATTTGTAGATTGTTTGCCTCCACTGAAGTTTAATGTTTagggaaagaaaaaaaaaaacattttttattctcACAAGGAAAAGAAAAAAACAAGCTTATTTTTTACTTTTCACAGACAATAGGTTCCTTTCCTAATACAGGAGGGATCAAATGACGTGATCTGTGTTGAAAAGCAAAACTCTACACATCCCAAAGCCCTAATCAAATCATTCCTCCTATAATGCACTATTTTGGCCATTCTCACAATCCTCCTTCAAGTAGCGTAGCTGAATGATGACGTTAGCACTGCAGTTTTAAAATGTTCTGTTTATTGCATAGAATTTACATAAGGGATCttatgttgtgtctttttattacCTTTGAGAACCCAAATATACAGCGTAGACTGACAGGACCACACATTTTTCAGTTGCACTCAATTATAAGCCCGCTCTCATAAAGTCCGCTTTATGCAGTCTTGAACACGGTATCGTAAATGTCACTGGCGTTGCACTCGATTCATAATCAAATGCTCTTCTAACAAATATTGGGCCAAAGCTACTCATTCAAAACACTATTCATGGACTTTTAGTAGCATAAATGCACCGGCACCATTCTAGGTCAGGAAGTGACATGTTCCGCTTGAAACTGCCCAAAGGTTGAAAGGTTCACGCAAAGTGATGCCCAAGCAGTTTGACCTCACTAGTGACTATATCTCTGTTTCTCTTACTCCCTTCTAAACTGCAGTTAATTGATAGTTACTGTGCGACACCTGTCTGACTTGTTTTGTGCTCCATTTTTTTTTCTTGcaaaatatattgtatttattcCACCACATTATGCCTTTTTAATGTGCTGCTTGGTATTTCTGAGGCATTCACCTGTACGAGAAGAAAAATAGTATATAACTAGTTTcacatatgtttttattttaggTTTTTCCCCTTTGTAATTAGTGATTGCGATGAGTATGTACAATAACCACTAGTGCTGGTACGTTTCTACTCGTTATTTTGTATGAAAAGTAATGAGGGTCAACTGTGCAATGGTATTCCATGTTGTATTACTGTAAAGATGAGAGATGGGCCTAGACCGCACCCTTTAACACAACAAAGAGAGTGGAAACAGAATCCAGACATTTTATTTCCTCATTTCAAAAGGCACAATAGAAGGAAAAAAGCAAAGGCGAGTGGTCAACAAAAAGAAATCAATGAAAATAAGGTTAAGCTGTGAGCCCTTCTGGAAGCTGAGCGAGACATCTCCACCGCTGACTTTCTGTGGCATTATGGGAgcagagagggttggagggggcTACCGCACGTTGACTTATAGTGCACATGGAAGAAAAATGCATATTCCTAATTGTTAACGGTACAACTTCCAGAGAGGATGTCTATTGTGTTGCCTTAGCAGATCAAGTGTAGAGGAGAAGCAGCAAGTGTTAAAGAAATATAAACGATTATGCCTCGCCCCTTTCATCTCCATTAACCCCTCCCCCCACATAAACCCCTCCTACCTGCGAGGAAAGCTCGAGTCATCCAGATTCAGTCTCTCGTGCACAATATTAAAGCTTACTTGAAAGGAGTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650192 lncRNA upstream 2111 34037940 ~ 34038151 (+) True G1441536
TU1649806 lncRNA upstream 109038 33882512 ~ 33931224 (+) True G1441188
TU1649910 lncRNA upstream 148770 33890743 ~ 33891492 (+) True G1441286
TU1649905 lncRNA upstream 157115 33882865 ~ 33883147 (+) True G1441281
TU1649847 lncRNA upstream 239866 33798975 ~ 33800396 (+) True G1441225
TU1650200 lncRNA downstream 1945 34123168 ~ 34123495 (+) True G1441541
TU1650255 lncRNA downstream 2700 34123923 ~ 34124147 (+) True G1441593
TU1650238 lncRNA downstream 5097 34126320 ~ 34126633 (+) True G1441576
TU1650242 lncRNA downstream 6498 34127721 ~ 34128226 (+) True G1441580
TU1650243 lncRNA downstream 15281 34136504 ~ 34136795 (+) True G1441581
XM_021568239.2 mRNA upstream 6139 33996168 ~ 34034123 (+) True LOC110493769
XM_021568238.2 mRNA upstream 44546 33983660 ~ 33995716 (+) True LOC110493768
XM_021568235.2 mRNA upstream 70162 33937534 ~ 33970100 (+) True LOC110493767
XM_021568237.2 mRNA upstream 77036 33937534 ~ 33963226 (+) False LOC110493767
XM_021568234.2 mRNA upstream 113808 33842339 ~ 33926454 (+) True LOC110493766
XM_021568245.2 mRNA downstream 8703 34129926 ~ 34132623 (+) True LOC110493772
XM_021568248.2 mRNA downstream 51853 34173076 ~ 34233684 (+) False LOC110493775
XR_002469191.2 mRNA downstream 120690 34241913 ~ 34254092 (+) False LOC110493777
XR_005036965.1 mRNA downstream 122006 34243229 ~ 34254092 (+) False LOC110493777
XM_036949768.1 mRNA downstream 168794 34290017 ~ 34317682 (+) False LOC110493778
TU1649941 other upstream 63787 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 515728 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1084205 32951800 ~ 32956057 (+) True G1440162
TU1648562 other upstream 1242830 32797098 ~ 32797432 (+) True G1440066
TU1648454 other upstream 1273555 32712860 ~ 32766707 (+) True G1439962
TU1650503 other downstream 168818 34290041 ~ 34295329 (+) False LOC110493778
TU1650494 other downstream 180264 34301487 ~ 34302609 (+) False LOC110493778
TU1651374 other downstream 1047675 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 1047675 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1552741 35673964 ~ 35744642 (+) True G1443221

Expression Profile