RNA id: TU1650509


Basic Information

Item Value
RNA id TU1650509
length 3026
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC110493778
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34290017 ~ 34317682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGATTTATTGTCAACCACCAAAATAATGTAGTTGTTAAGCCTTCACCTATTTGCTTCATCTGGAACTTCCCTGAGGATGCCAGTAGCATCCATCTAGACTCCCATCCTGGTCAAAACTCTTCTTGTGCCTAATTGTGCCTGAATTGTTTAATGTTTACCTTAAATCCTGCATTGTGATCTTCTTTGACTCCTTATTCTGTAAGGCACTcatcagtgtattatatagtttATATTTTACTTCTTATCAATGACAATGGCGTCCTATAATTAGGATTTGGATGTATCAGAAAGGTTACCGAGACTATGATGCATCTCAGAGCCCCTACTCTTCCCAATAAACGGCAACCCTCTCCTGCCCTTAGTCGGTCTGCTAGGTACCCCCCCATACTCACACTTCTAGGATCACCCACAGTGATGAACGGTCGGGATAGGAAATCGttaaaacctctagtgactccccatcccgcatgcagGAGCgtatgacaattatcccgcttaagggatgggtagcgtcaagaagttcaGAACCTGGTATGGGCCTTCCCAATGGGGCTGCTTCCAGTCTATTCTCCTCAGGGACTGGATCCACAACCCAGTCTCCTTGTTGGATTGAGTGAATCCCCTTCTCCTGTAATTCACCTGTTGGGCACAAAATCTTGGACATACGGGTTTGGTTACCAAACAGTCTTCTCATGTGTTCTGCTAGTATATCTTCAACTTCTATGTCTACCTGTTCTGGTCCCTAACTCTGGCATTATATTTGTTCTACCTTACTAGCTAAAATGTCATCCATTATTTAAAGACCGAGATCCTAGTAAACCAACTCTAGGGATAATATCTCTACCTAATATTTGTACTACCATAATCGTGTCCGCCAAGTAAGTTGGGAACGCTTCTACCCATCTGCTATATTTATCTATTATAATAAAAATGTAAGTAGGTCGTTATCACCTAGGACACAACGTCTTTCCTAACCTGCAGTGTTTCCTAACCTGCTCTACCATCCTTCCTCTAACCTGCTTTCTGTCTAACCTGGTGATTGTTCTGTGCACATATAACACAACatgaacatttttttttaaaagagttAGTTATTCCGTATGCTACAAAGTGTTGTCTAATTATCCCTACCATCCCTCCGGTTGATACGTGGCTCTGCCCATGTATCAATATTGCTACATATCCAAACAATGACTTAAGTAGTTCTGTTACTATCCATTCCTTTATTATGAGCCTCACACTTACAAATGGCTAACTTTTCTGGCAAAAGTACAGCCTCTCATAGATTCAAAATCAACTGACCGAAATCTCTACTGGGGCTGCTTTCTTTGTCAAAACCTTGGAGAATTGCACTGTGCATCTCTTTCTCTAATTACACTCCCCCTCTACCAAGTCCTCAAAGATGGGGGGTAATCTTTTTTATGGCCTCTGGCTTTCTGTGGGAGTGACAGCCACATTCAACAGATTTATGTAGACGTAACCTGGAGTTCCGGACTGGAGTGCATGCCTGCCCTCCCAACGTCTCATGTTTCATAACCAATGGAGCATACAGTCTCTCTGCTGATGTCCGAAATCTGAACAATCAAAATCTTTTCCCCATTTCTTGTCGATGTCAAATAGGACTTCTGTTCCTTTTGTAATGCCAGATCAATAGTAACCAATTCGAAAACTTCACAATCAGTGTTTACAACAGAATCCTGAACCTCCTCCTCACTAGAGTCTATTCCCCCGCTCCCCATAATTAGTCCTGCCTCAATTCCCCTTCCTCTTCTGAGTCTTGGTGCTCATAGTGAACTGCATATCTCTTCACCTCACCTAGCTCGGCTCGCCctcaccctactaagttctgtttaatgatACGGCTTATCTCGGGACGCATTCCACTAAGGAAAGCAATTATTTATTGTTGACTATAAGGGACATTGGGTCCCTCCACTGCAGGGGATTCTTTTAACCCACTATTTAGAGTTAAACACAGCCTTTAATCTTTCTAGGTATTGACTTAGTCTCTCTGTCGCCCTGTTTGTCCTCAGACTTTAGAAAAATCAACATGTCTATAGTATTGATCTCAAAGATTATTACATAGTTCATTCAGTTTATCTTGTCCTCTCAATGATCCTGGATCACCACAGATGTCATACATTCCTGTCCTGTTGGCTTAGAATATGTCCTGAATACTTAACATAAGTCTACCATTAGTCCAAGGCTATACCATTTCTTTCTTCTCTTTGGTTCAAACTACAAATATGTCAAACAACTATAAACTCCATCATAATGAACAATTACACAAAATGACCTTAAAATCAGTATTACAAATGACCTTAAATTCATTATTCATTaaattcattatccaaatggccCTCCCATGAGGCCATACTTATTTCAATGGGTGGTTTGACTTTTGACCTCTATCATGGCTTTCCTTTGTGGTCTGccacaaattattgtttttgcGACTCTCGACTGATTAATATATCTATCGCTACTTGTCATAGTCTCAGACTACTTCCCATATACAATAGACTATTTAGGTCCCACACGTAAACGAGTTACCGCTTCTTATGACTCTTGACTTGTTAATAAACCTGTCCCTTGCTGATATCCTTCTTTAAACtttctctcaccctttctctacTCAGTAATTTCGGTAGTTGTCTCCTACTCGGTCACAATGTTTACAGGGAGCCTTACATTCCCGGTCGACATGTCCTGTCATTAAAAATGTCTGTAAATATCTGTAATTACTGTAGTGTATGCTGTAGTGTATACATACAAAGGTGTTTGTATTGCATTTGATACATTTTCATGTAAGTTTGTAGTCTGATTCCTCTCAAGCTTTTGTGGGGTACCCCAGGTTAGCCACCAGGGAGAGACGCATTGAGGCCTGGTAACAGATGGGAGTCTACATCACACAgcgatggctccctctgctggaatTGCCAGGTCTCGAATGGGTCTCCGGCCAGGACTAACTGAGGCTGATTATGCTTGGTAAGTAATCATGgggtgtcagtaaacatcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650507 lncRNA upstream 10651 34301487 ~ 34303980 (+) False LOC110493778
TU1650430 lncRNA upstream 59978 34241939 ~ 34254653 (+) True LOC110493777
TU1650277 lncRNA upstream 76840 34235198 ~ 34237791 (+) True G1441614
TU1650278 lncRNA upstream 82540 34231447 ~ 34232091 (+) True LOC110493775
TU1650315 lncRNA upstream 85916 34228375 ~ 34228715 (+) True G1441652
TU1650539 lncRNA downstream 588 34318244 ~ 34319132 (+) True G1441844
TU1650565 lncRNA downstream 28927 34346583 ~ 34346878 (+) True G1441867
TU1650572 lncRNA downstream 35603 34353259 ~ 34356258 (+) False G1441872
TU1650573 lncRNA downstream 35623 34353279 ~ 34356258 (+) True G1441872
TU1650571 lncRNA downstream 38923 34356579 ~ 34361327 (+) True G1441871
XR_002469191.2 mRNA upstream 60539 34241913 ~ 34254092 (+) False LOC110493777
XR_005036965.1 mRNA upstream 60539 34243229 ~ 34254092 (+) False LOC110493777
XM_021568248.2 mRNA upstream 80947 34173076 ~ 34233684 (+) False LOC110493775
XM_021568245.2 mRNA upstream 182008 34129926 ~ 34132623 (+) True LOC110493772
XM_036949762.1 mRNA upstream 193408 34040262 ~ 34121223 (+) True LOC110493770
XM_021568261.2 mRNA downstream 113231 34430887 ~ 34443032 (+) False LOC110493783
XM_021568262.2 mRNA downstream 113725 34431381 ~ 34443032 (+) False LOC110493783
XM_021568260.2 mRNA downstream 120272 34437928 ~ 34443032 (+) True LOC110493783
XM_021568265.2 mRNA downstream 142434 34460090 ~ 34468487 (+) False LOC110493785
XM_036949770.1 mRNA downstream 143247 34460903 ~ 34468487 (+) True LOC110493785
TU1650494 other upstream 12022 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 19302 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 338156 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 790097 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1358574 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 851242 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 851242 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1356308 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 1429216 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1921288 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile