RNA id: XM_021568260.2


Basic Information

Item Value
RNA id XM_021568260.2
length 1564
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110493783
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34430887 ~ 34443032 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTAGACCATTCAATTGAAACAGTCACCCACGGAAACGCAAAACAAACCCGCCCAATGCTTTCTGTTCTTGCTGTTAGGGTGGCCAGAAGGGTTATTTCTTCCCCCTTCGATATAGTTTGAGAATAAATTAAACCAAATGATCACTGTTTCTTATAACTGTATTGAACTAATGATAAATAGAGAAGATCGACAGCACAATTCTCATAGAGTGTAGGAATGACGTCAGCAGCCGTTCTGAATACAGCACGAGTACAAACCTCTTGACCGGAGCAAAAATGATGTCTAGCATTTACCTAACTGGAGTTCTACGTGTCATTCTGGTATCGATTATCAGTTTAGGAGGATTTGTGGTGCTGTTTTTAATGCATTACAGCTCGGCACCATCTCTGTTCTGCCCTCCCCTGCCTGCTTTCCCACCGCAGTACTCAGAGAGACCCCAAGGACAGCACAACAGCTCCTTGGCTAAGACCCTACCAGACAAGCCCATTATGTTGTTGTGGTTCTGGCCTGAACACTACAGGTTTGACTTAAGCGATTGTGCCACTCTCTTCAACATTGATAGCTGTCTCCTGACTGATGACAGGTCAATATACAACAAGGCAGACGGGGTGCTCATCTTTCACAAATCCATCAAGCAAGATTTATCCAACTTGCCTCGATCACCCAGGCCACCATTCCAGAAGTGGATCTGGTTCCATGTTGAATCCCCTACAAACACAAACAGGCTATCTGGTCTAGAGAACCTTTTCAATTTGACCTTGAGTTACAGGCAGGACGCAGACATCCCTATTCGTTGGCGCTTGACCGCAAGAAAAGGCCAGGGGGAGGATTTTGTGCTGCCAAAAAAAGATAAATTAGTTTGCTGGATTGTGAGTAACACTAATCCTGCCACTGGATCAGGCCAAAGGTATAACTATTACAGAGAACTTGTCAAACACGTTAAGGTGGAAGTCTTTGGCAAGGCCTTTGGCCGTTTCTTGAACTATGAGGACTACTACGATACCATCTCCAGCTGTAAGTTTTACCTTTCCTTTGAGAACTCAGTTCACAGAGACTATATCACTGAGAAGCTAAACGGACCACTTGCAGCAGGAACTGTACCAGTAGTATTGGGCCCACCTAGACAAAACTATGAGGACTTTGTCCCAGGAGATTCCTTCATCCATGTTAATGACTTTCCAGATGTGAAAGCCCTGGCAGAATTCCTCCTGAAGTTAGACAAGGATGATGAGGCATATCTGCACTACTTTCAGTGGCGTGAACACTTTTCTGCTCAGCGCCATCTAATTCAACAGTATCAAGAGTTCACCCATGCTATTTGTTATGCCTGTGACCATGTGGGAACACATAAGGAGTACAGAGTTGTTCACAATCTTTACAAATGGTATTTTGGTTAATAAGGAACTTACAATGATCTCTACAAATATTggtgttttgagccccacattttcagcaaccccccaaaaatatgggCTTGCCTGTTTTTTTGGCCATTAATACGTGTCCCATGTcaatttgcaaacaatgtaaaaaatatattgagttaataaagctgcataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650607 lncRNA upstream 21669 34415631 ~ 34416259 (+) True G1441906
TU1650608 lncRNA upstream 23621 34413542 ~ 34414307 (+) True G1441907
TU1650620 lncRNA upstream 28778 34408934 ~ 34409150 (+) True G1441919
TU1650585 lncRNA upstream 65874 34371592 ~ 34372054 (+) True G1441884
TU1650584 lncRNA upstream 66801 34370227 ~ 34371127 (+) True G1441883
TU1650637 lncRNA downstream 10891 34453923 ~ 34457723 (+) True G1441929
TU1650655 lncRNA downstream 112585 34555617 ~ 34560437 (+) False slc8a1a
TU1650662 lncRNA downstream 112585 34555617 ~ 34560437 (+) False slc8a1a
TU1650657 lncRNA downstream 112652 34555684 ~ 34560437 (+) True slc8a1a
TU1650711 lncRNA downstream 119323 34562355 ~ 34562687 (+) True G1441989
XM_036949768.1 mRNA upstream 120246 34290017 ~ 34317682 (+) False LOC110493778
XM_036949769.1 mRNA upstream 120246 34290021 ~ 34317682 (+) False LOC110493778
XR_002469191.2 mRNA upstream 183836 34241913 ~ 34254092 (+) False LOC110493777
XR_005036965.1 mRNA upstream 183836 34243229 ~ 34254092 (+) False LOC110493777
XM_021568248.2 mRNA upstream 204244 34173076 ~ 34233684 (+) False LOC110493775
XM_021568265.2 mRNA downstream 17058 34460090 ~ 34468487 (+) False LOC110493785
XM_036949770.1 mRNA downstream 17871 34460903 ~ 34468487 (+) True LOC110493785
XM_036949773.1 mRNA downstream 67575 34510607 ~ 34555384 (+) False slc8a1a
XM_021568266.2 mRNA downstream 67575 34510607 ~ 34558324 (+) False slc8a1a
XM_021568269.2 mRNA downstream 67575 34510607 ~ 34558324 (+) False slc8a1a
TU1650494 other upstream 135319 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 142599 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 461453 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 913394 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1481871 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 725866 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 725866 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1230932 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 1303840 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1795912 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile