RNA id: XM_036949773.1


Basic Information

Item Value
RNA id XM_036949773.1
length 3371
RNA type mRNA
GC content 0.51
exon number 10
gene id slc8a1a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34510607 ~ 34560437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATGTTTAGAGAGACACCTTGGGACCGGGCATCTGCGGAACAGTCTGTTTCTGTTCAATTTAGAGTGGTTATCGCACACCGTTCTTCCCGCTAGGCAGTACGTATTTTTCTCAGCTCCATTGGGACTAACATAGgtGAAAGGAAGAGTTGGCGCATAACACCTCGTCAGAATCATGGGTCAAACTGGGACATCATCTTTCCTCTTCTGCACTCTTCAACTCACAGTGTTGTTGGCAGTTTTTTCATCTGAAATTACATTTGTTACAGCGGTGAATTCAAACCCAAGCCTCGGAACAAACTCTTCCATTGGCAACCAGACTAACAAGAAGTGTGATTCAGTGGGTACTGAATGCAAAGTGGGTGTCATTCTGCCCATATGGTTACCAGAGAACCCATCCTTTGGAGATAAACTGGCAAGAGCCACAGTTTACTTTGTGGCCTTGTTTTACATGTTCCTGGGGGTCTCTATCATTGCGGATCGCTTCATGGCATCCATCGAGGTAATTACATCACAAGAGAGGGAGATCACCATCAAGAAACCAAATGGTGAAAAAGTGACAACCACTGTGCATGTATGGAATGAGACAGTGTCCAACCTGACACTtatggccctgggttcctccgcCCCGGAGATCCTACTGTCCGTCGTTGAGGTGTGCGGTCACAACTTTGACGCAGGTGATCTGGGCCCGAACACCATCGTTGGTAGTGCTGCCTTCAACATGTTTGTTATCATTGGACTCTGTGTTTCTGTCATTCCCGATGGAGAGCACCGGAAAGTCAAACATTTGAGGGTATTTTTTGTTACCGCCACCTGGAGTATATTCGCGTACACCTGGCTTTATCTCATCTTGGCTGTCATCTCACCGGGCATCGTACAGGTGTGGGAGGGCCTTGTCACACTGTTTTTTTTCCCGTTGTGTGTAGGGATGGCTTACGTTGCGGATCGCAGACTTCTTGTCTATAAGTACATGTACAAGCGCTACCGCGCAGGGAAGCGAAGGGGGGTGATCATTGAGACGGAAGGGGAGGCTCAACTTCCTTCAAAGATGGACATTGAAATGGATGGGAAAATGCTCAACTCAGAGGGCTTCATGGACGGAGCGATGGGTTTTGATGAGAAAGACCTGGATGAGGAGGAGGCCAGGAAGGAAATGGCCCGGATCCTGAAGGAACTGAAGCAGAAGCATCCAGAGAAGGAGACGGAGCAGCTGATAGAACTGGCCAACTACCAGGTATTGACACAGCAGCAAAAGAGTCGCGCCTTCTACCGATGCCAGGCTACCAGGATCATGACGGGAGCAGGGAATGTACTGAAGAAGCATGCAGCAGACCAAGCCAGGAAAGCTGTTGGTGCATACGAGATCCGCTCCGAAGTTTCGGAGAATGACTTTTCGTCAAAGATCTTCTTTGACCCCTGTACATACCAGTGCTTGGAGAACTGCGGTACAGTGGCCTTGAATGTAGTACGCCTTGGTGGGGACTTGACTAACACTGTTTCAGTGGAATACCGTACCGAAGACGGCACAGCCAATGCCGGCTCGGACTACCAGTTCACTGAGGGCGTTGTGGTGTTCAAACCTGGTGAGACTGAGAAGGAGATCCGGATAGACATCATTGACGATGACATCTTTGAAGAGGATGAGCATTTTCTGGTCCACCTTAGCAATGTGAAGGTCATATCCGAGGGCACTGGCTACGGACAACCAAGGGCTAATCACATGGACACTTTGGCGGGCCTTGGCCTGCCCTGCTCAGCCACTGTGACTATCTTTGACGATGACCATGCCGGGATCTTTACTTTTGAAGAACCGGTAATGACCGTGAGCGAGAGTGTCGGCATGATGGAAGTAAAGGTTCTTCGTACCTCAGGAGCGCGGGGACTAGTGGTCGTACCCTACAAGACCATTGAGGGTACAGCaaaaggagggggagaagacTTTGAAGATATGCACGGAGCGCTGGAATTCCAGAACGATGAGATCTTCAAAACTATACAGATCAATATAATCGATGACGAGGAATATGAGAAAAACAAGAACTTCTTCCTTGAGATGGGAGAGCCTCAGCTGCTGGAGATGAGTGAGAGGAAAGCTGTGTTGCTTCAAGAAATTGGTGGATTCGTGAAGACAGACAAAAGGCTTTATGGCAGGGACGTCTACCGGAAAGTGCAGGGTAGGGATAACCCTGTCCCCGCCACCATTATCAGCATTGCAGaggaaggggacGAGGAAGCTCTCtccaagaaggaggaggaggaacgccGCATCGCTGAGATGGGCCGGCCCACCCTCGGGGAGCACGTCAAACTGGAAGTTGTCATCGAGGAGTCGTATGAGTTCAAGAACACAGTGGATAAGCTGATTAAGAAGACCAACTTGGCTCTATTGATTGGAACCAATAGCTGGAGGCAGCAGTTTATGGAAGCTATCACAGTCAGCTCTGGCGATGATGATGAGGACGAGTGCGGCGAGGAGAAGCTGCCCTCCTGCTTTGATTACGTCATGCACTTTCTCACCGTCTTCTGGAAGCTCCTGTTTGCCTTTGTGCCGCCCACTGACTACTGGAACGGCTGGGCCTGCTTCGTGGTCTCCATCAGTATGATTGGCCTGCTCACCGCCTTCATTGGAGACCTGGCCTCCCACTTTGGCTGTACCGTGGGCCTCAAGGACTCCGTGACCGCCGTGGTGTTTGTGGCGCTCGGGACGTCTGTGCCAGGTGTGTTCCATACATGCCACaatacacatgtatacacacacatagacatattcacacacacacggtggGTCTCATTAGGACTATGTCACCAATCTAGTGTTTGCGGCATTGGGACGCCAGGTTAGTAACATACACCATCTAACTCTACACTCTCATGACAGGGTTTTATCACAATTAGGCATTGTCACTCCTAAAGGCAGTGCTTTGTATGAAGTGTTCTTGAGTAGTACACTATGTCATATCTCTTGTCATGCATGGACATCTAATTTTGGATCCCATGTCACCCTACCACCATTCACAATTCTTATTTTTCTTCCTTTCCCTttcactttatctctctctctcactcccccagaCACGTTTGCCAGCAAGGTAGCTGCAATCCAGGACCAGTACGCCGACGCCTCCATCGGCAACGTAACGGGCAGCAATGCCGTCAACGTCTTCTTGGGGATCGGCGTGGCCTGGTCCATCGCCGCCATCTACCACAATTCCAAGGGAAACGACTTCCGGGTGGATCCGGGCACCCTGGCCTTCTCCGTCACCCTATTCACCATCTTCGCCTTTGTCGCCGTGGCCGTGCTGATGTACCGGCGCCGGCCTGAGATTGGGGGCGAGCTGGGTGGGCCCCGGGGCCCCAAAATCGCGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650637 lncRNA upstream 52884 34453923 ~ 34457723 (+) True G1441929
TU1650607 lncRNA upstream 94348 34415631 ~ 34416259 (+) True G1441906
TU1650608 lncRNA upstream 96300 34413542 ~ 34414307 (+) True G1441907
TU1650620 lncRNA upstream 101457 34408934 ~ 34409150 (+) True G1441919
TU1650585 lncRNA upstream 138553 34371592 ~ 34372054 (+) True G1441884
TU1650655 lncRNA downstream 233 34555617 ~ 34560437 (+) False slc8a1a
TU1650662 lncRNA downstream 233 34555617 ~ 34560437 (+) False slc8a1a
TU1650657 lncRNA downstream 300 34555684 ~ 34560437 (+) True slc8a1a
TU1650711 lncRNA downstream 6971 34562355 ~ 34562687 (+) True G1441989
TU1650712 lncRNA downstream 13102 34568486 ~ 34569276 (+) True G1441990
XM_021568265.2 mRNA upstream 42120 34460090 ~ 34468487 (+) False LOC110493785
XM_036949770.1 mRNA upstream 42120 34460903 ~ 34468487 (+) True LOC110493785
XM_021568261.2 mRNA upstream 67575 34430887 ~ 34443032 (+) False LOC110493783
XM_021568262.2 mRNA upstream 67575 34431381 ~ 34443032 (+) False LOC110493783
XM_021568260.2 mRNA upstream 67575 34437928 ~ 34443032 (+) True LOC110493783
XM_021568271.2 mRNA downstream 25597 34580981 ~ 34583315 (+) True LOC110493788
XM_036949775.1 mRNA downstream 54429 34609813 ~ 34694633 (+) False map4k3a
XM_036949774.1 mRNA downstream 54430 34609814 ~ 34694633 (+) True map4k3a
XM_036949776.1 mRNA downstream 140013 34695397 ~ 34769825 (+) False LOC110493792
XM_036949777.1 mRNA downstream 140013 34695397 ~ 34769825 (+) False LOC110493792
TU1650494 other upstream 207998 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 215278 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 534132 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 986073 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1554550 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 613514 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 613514 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1118580 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 1191488 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1683560 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile