RNA id: TU1650662


Basic Information

Item Value
RNA id TU1650662
length 4800
lncRNA type sense_over
GC content 0.39
exon number 2
gene id slc8a1a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34510607 ~ 34560437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaaagtatttgaaagattctAAAATGAAATTGAAAGATTTTTAGTCTTtgaaagctaaaaaaaaaagaagaatttATCGCTTTCATCCAAGACCTCTGAACTATGTACGATTAAATCCAAGGTTTTTGAAGGCATTGACGTGTCACATCTCCTACGCCATTGACTACCACGTCCCGTTGTCCTAAATCTAACATCCGTGACATCCAATGCTTTAGCCATCTACTGCCACATCCAAGACATGTGAAGAATCCACTACTACAACTAAGGCCTCTAAACCAACACCAGCAGGATGGTGGCCCCAAAAAATTCAAACGTGAAAACGGAGggattctgtttttgtttttttaactaTTAATTTAGTGTTTGTTCTCTAGCTCCTTCAATCCTGTTGTTGCAGCTTTATTTTCAATGGAAGCTCTCTGTTGACTTTCATTGGATCAAGACTCCTAAGGCTGTGTATCCAAAAAAATGTCATTTCAGATGAAGCAAAAAACTTGTGCTTGTTTGGTTATACAGAACTTCAAAGCTATGCCTAAAAGCGCTGCTGGCTGGCGTCCACAATTTCTattcagtgccccccccccccaaaaaaatacacTAGACAAATATGTCATAATATTCCTGTAACACAGAAACGTGAGTGGTTGTTTAAATGCGAAGGGCATATGGATGATAAATACATAGTTACTGAGGTAAATACCTAAATGTGACTATAACTCCTGTTATGTCTACACAGTACTGTTGCAGTCATGACTGCATCTCCAATACCACAGACACTAAAGAAACCTTTCCTTACTAGAAGAATGTCTTGATATAAAATGTCACTAATGCAcatgttatatattttttgaaattcCCCATGAAACATTTATCAGCGACAATACTATTACACTAGACAAGTCAATAAATAATGAATTAGAGGTGAAATAAGCACTATGGCTTTGTGAAGTGTATTTACTGTATATCCTATAATGTCTTCTATGATCTTTCTTTTAATTGTGTTAAACATATTTCATTCGGTCGGCTTTGTCTGCTAACAGACCATTTTTACAATGAAGAGATTGTGAGAACGTTATACAGTGGAGACAGTGTAAAAGATGAGAATATCACAGAATAATACACAGAGATGTTTTGTCAAAAGGGGATCTGAATTTTCACTAAAATACATTTAACACAATTTACAAATGAAATATCATTGTAAAACAAAAACTAAACAGTGTAAATTAAAATCAAGTTTTCTCAACAGAAAATATATAATTGGAAGGAATGAGCCTAGATATCTTTCAGTGACAgctttttgaaaatgtttttagGGAAGTGAATCAACCTTTTCTAGCGTGGTTGGTTGAGTTGAAGCTCTTTTGATATTCTTATCAGACCTCTTATGACAAGAATTATATCCTAAGACGAAGATCCATACTGTATCCTTCATATTTGGGTGAATAGGACTTCCATCGTAGTAAGACGATAAAGTCCAGAAAATGTATAATATGCCTTGGATGGGCAACTTCCTTGAATAGGCCTGCGGACCAatatagaaaaataaataaataaattcttAGGAGCTTCGTTGGAGTCTCAATTTAcagttgagagttagaataatagaatacacaaggtgcaatttcgaaatttggttgtgcttcagcctccaccctatggcaaaattggtagaattgcatgaaattagctgtaaaactgcaaatatttctctccgccccatggcaaaattagtAGAACTGCATTAAATTagttgtaaaataaaaaaatattctctCCGCCCtgttgcaaaatgtgtagaattgcagcaaacttgctttaaaacggcaagatttctctacaccccatggcaaaatgtgtagaattgcaggAAATGTTTCTCTTCGCTGTCACGAGGGGTTCGCTAAAATGTTTTGTTCGCTGGGGGGTGGTATTGATGTGGCTACGCAGACCCACGAGCCACTGCAGTCCCTCATGATGAGGTCCATTGCTCATCCCTGTAGTAAGCTATCAAGATCTCCAAGACAGAGACTGCCAATCCCTTTATATATTTGATGTCCCTAGCATCTTTCATTTTGTCTGTTAACTACTGCAGGTGACAGAGAAAACAACAAAAACTCTACAGTTGTGCTTCTTTCATAGAAAAGTCATCAAGAATTTCTTGTGTGTCAAGTTTAGTCATACATTGTTGTTGATTCCTTGTCCAGGTGTGCGGCGATGTTCACTTTAGCGCCGTGGTGAGCATAGTGTGCCAGTGTTGTCTATACCTCGTGTTGTCTATGTCTAAATAATCCTCAATGTTGGATTATCAATGTGCTACTTGTAAACTATATGCATGAGTGTAAACATAACTGTATATAATAAGCCGTAGTTATCATTAACATTAGGGGACACATTTTGATAATGAGTAGTAATGGATTTGGGTTCATtaagtttgtttttgtgtgtttgctCCTGGAACAATGTCATCTGAAAGACTACACTCTTTAAAGTAATGTGAACAAATCATTTTCTTATTTGTATGAAAGGCAATATCTCATACTCTTGTGTTGATGATAGTTATTCGTACTGTCCAAAACGACATTGCTCTGCTtgagtttgctgatgtcaagttTGAGGAAAAGACGAAGCAGTACTTTGTCTGTGTTATCTGTTTTTGTATATAGTGTACAGTGTTGTCAAAGTGAGGTAGTTGGCCTCAATGTTGAAAATATAAGATTCAAGCTATTTATTTTCCTACCCTTTGGGGACACAAGAATAGCTAATGTTACCTTCCAGGGGAGCTGCGTTTGAATGGACTTTCACCCCTCTTTTCCTCTATAGTTCCCAATGAGTCTGGGTGGTTCTCAAGGTCCTTGAAGAGGCATTTATATCCTTTCTTGCAATGGAAGTTGTCTTGTCGTCATTCAGGGGCCAAAACGGATACTCCCTACCTACTACAGAGTGAATTCAGCCAAACCTAAAAAAAGAAGTATCACTTTATCAGTATTGTGTGAATGCATGTTATTGTAACTTCTTGCACAGTTTTGACTggtttaaacaaaacaaaaggaaTTGAGACcaatttttttctctcacattAAGCACATTGATTCACTATTAGGACAGCTGATGCGTAAAAAATAGCCATATTATGGCAtctgtttatttcacctttctcATTGTTCCTATTAGTGATGTCACACACATTGACAATATTTGATTGATTCAATCTTCCTCAGCTTGTCACAAGCCTAGGCCCACCTCTAGACTCGTTGTTTTATGTATTAACATTGGTCATGTATACTGTATAGCCTGGTCCCCTTCTGTAACTGTGCTGTAGCCAACTTTCTATTCTATCCTTGTCAAGctacacatacactatatatacatatggaaaccccttcaaattagtggatttggccatagacaaacattggcagtagaatggccttactgaagagctcattgactttcaacatggcaccgtcataggatgccgaCTTTACAGCAAGTTAGTTAATCAAATTTTTGCCCTGCAAGCGCTACCCCGCTCAATTGtacgtgctgttattgtgaagtggaaacatgtaggtgcaacaacggctcagccgtgaagtggtaggccacacaagctcacagaacgggaccgccgagtgctgaagtgcgcaACGTGTAAAAATcgtttgtcctcggttgcaacactcactaccgatttccaaactgcctctggaggcAGCGTCAGGatcttcatgaaattggtttccatggccgagcagtcgcacacaagcttaagatcaccacgTGCATtgtcaagcgtcggctggagtggtgtaaagctcatcgccattggactctggagcagtggaaatacgttctttggagtgatgaatcacccttcaccatctggcagtctgacggatgaatctgggtttggcagatgccaggagaacactatctgccccaatgcatagtgccaactgtaaagtttggtggatgaggaataatggtctagggctgttttcatgattcgggctaggccccttagttccagtgaagggaaatgttaacgctacagcatacaatgacattctagacaattctgtgcttcccactttgtggcaacaatttggggaatAAACTTTCCTGTTtcacatgacaatgcccccgtgcacaaagcgaggtccatttagaaatggtttgtcgagatcggtgtggaagaacttgactggcatgcacagagccctgacctcaaccacatcgaacctttgggatgaattgaaacgccgactgcgagccaggcctaattgcccatcATCagcgcccaacctcactaatgctcttgtggctgaatggaagcaagtccccgcagcaatgttccaacatctagtgtaaagccttcccagCAGAATGGAgggtgttatagcagcaaagggggaaccaactctattttaatgcccatgattttggaatgagatgttcgacgagcaggtgtccacatacattttgtcatgtagtgtatgacAAGGAACGAACACAGAGAGGAGTTGGCAAAAGCGTAAACAGACTGGACCACCAGGCTAGGTAATACGAGCACCATATTTCTCTCAGAATGCTTGTTCTGGGTTTCATtgagtgttttattttatttatcagggtttttgttttaaatgtatttgtttgctgttaaaatgtatttgaatgTCATGATTTTTCTTTCATTGTGCACGCAAAACAGGAGGGACGTACACAATCTGTAATGTGTACCAAGGCTGAATTAGTTCTGTCGCAGAAAATAAACGTTTTGAAACCTAGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650637 lncRNA upstream 97894 34453923 ~ 34457723 (+) True G1441929
TU1650607 lncRNA upstream 139358 34415631 ~ 34416259 (+) True G1441906
TU1650608 lncRNA upstream 141310 34413542 ~ 34414307 (+) True G1441907
TU1650620 lncRNA upstream 146467 34408934 ~ 34409150 (+) True G1441919
TU1650585 lncRNA upstream 183563 34371592 ~ 34372054 (+) True G1441884
TU1650711 lncRNA downstream 1918 34562355 ~ 34562687 (+) True G1441989
TU1650712 lncRNA downstream 8049 34568486 ~ 34569276 (+) True G1441990
TU1650717 lncRNA downstream 28925 34589362 ~ 34590022 (+) True G1441995
TU1650728 lncRNA downstream 46416 34606853 ~ 34607089 (+) True G1442004
TU1650729 lncRNA downstream 47018 34607455 ~ 34607674 (+) True G1442005
XM_036949773.1 mRNA upstream 233 34510607 ~ 34555384 (+) False slc8a1a
XM_021568265.2 mRNA upstream 87130 34460090 ~ 34468487 (+) False LOC110493785
XM_036949770.1 mRNA upstream 87130 34460903 ~ 34468487 (+) True LOC110493785
XM_021568262.2 mRNA upstream 112585 34431381 ~ 34443032 (+) False LOC110493783
XM_021568271.2 mRNA downstream 20544 34580981 ~ 34583315 (+) True LOC110493788
XM_036949775.1 mRNA downstream 49376 34609813 ~ 34694633 (+) False map4k3a
XM_036949774.1 mRNA downstream 49377 34609814 ~ 34694633 (+) True map4k3a
XM_036949776.1 mRNA downstream 134960 34695397 ~ 34769825 (+) False LOC110493792
XM_036949777.1 mRNA downstream 134960 34695397 ~ 34769825 (+) False LOC110493792
TU1650494 other upstream 253008 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 260288 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 579142 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1031083 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1599560 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 608461 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 608461 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 1113527 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 1186435 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1678507 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile