RNA id: XM_036949776.1


Basic Information

Item Value
RNA id XM_036949776.1
length 7809
RNA type mRNA
GC content 0.51
exon number 24
gene id LOC110493792
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34695397 ~ 34769825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGCAATATTCTTCTACCAGCAACTGCACCCGACCCGAGTCATAACAATCGTCTAAATAAATATTTTTGACCAAAGGTAAACTGGTAATTAAAACCAGCCTTTGCGTGGATTCTTGGTTTTCTCGATAACCAAACAAAAAGGCTAAATAGTCTGAAGACATGTTTTGGAAATTATAAATTCATGGAGGATAACACGGTTATCAATATCCACCCTGCCGAAGATTCGGTGAAAATGGGCGATTTTGTACCGAAGAGGTTTTTTTTGCCCAAAATATAGGGAATGATTCAACTGGCCGAAAAGGACGAACAGTATCGCATTTCCCGAAACGTGAAGTGACACATTCACTCCCACGTTGGATACTAGCTAGTCAGCTACGCCACTGTCCACATATTGCTAGTTAGTTCATCACTACTCCAACCATCTTCCGATTAGGATCGATCCGCTACGGCTAGTAACATCACCAGCTcggctgctagctagctactactagctTGCTAAATTAGGTAGGGTAACATTTGTTGCCACCAACAACGTCAGTTCGGAACTTGGAAACATTTCCATCTGCCAAAGCAACGCAAGCTTGCTAGTTAGCGTTTGAAGTATCTTTGGGTTCGTGCATTTTGAGCTTTTTTTAAACTCTCGGTGTCCCGAAAGAGCAACCCTGCTAGCTAACGATAGCGACTTGCTTCGGCAGCTGGAGACGGCTAGCTAGCAGCTATCAACATCTGTACACTGCCGATGCAATGGTCGCATTGTTAACTGTTTTGGTAGAGGAATGCTCATTTGGTGGATATTCTGAGGCAGCGGGCCGCACAGAATATTGCACCTCTCAGTTCCAACCACAGGCCACACTATATACTGCTTTGATGTGAGAAGTGGCCGTGAACACACAACGCTCACTGGCTGCAAGATAGCGCACGAAGACCGGCAGCTGAAGCCATGCAAGCGGCCCAGGTTCAGTACGACTTTTTCAGCGAGGAGAACGCACCGAAATGGCGGGGGCTATTGGTACCCTCCCTGAACAAGGTGCTGAGCCAGGTACATCCCAAACTGTCGTCCCAGGAGGATGCACTGCAGTACATCGAGGAGCTGATCCTACTGCTGCTCAGCATGCTCTGCCAGGCACAGCCACGCAGCGTGCAGGACGTGGAGgAGCGAGTGCAGAAGAGTTTCCCTCACCCTATCGATAAGTGGGCTATCGCCGACGCGCAGGCAGCCATcgaaaagaggaagaggaggaatccTTTGGCCCTGCCAGTGGATAAGATCCACCCGCTGCTCAAGGAGGTACTAGGGTACAAGATTGACCACCAGGTGTCGGTGTACATCGTGGCCGTGTTGGAGTACATCTCAGCAGACATCCTGAAGCTGGCAGGGAACTACGTGAGGAACATCCGCCACTATGAGATCTCCCAGCAGGACATCACCGTGGCCATGTGTGCCGATAAGGTTCTGATGGACATGTTCCACCAGGATGAGGAGGACATCAGCGGTTTCCCCCTGATGGACGAGGAGCCGTCCACCAGCGAGGAGCAAACCTACTACGACCTGGTCAAGACCTTCATGGCCGAGGTCCGACAGTACCTGCGCGACCTCAACCTCATCATCAAGGTGTTCCGCGAGCCAATCGCCTCCGACGCCAAGCTCTTCTCCCACCATGATGTGGAGAACATCTTCAGCCGCATCGTGGACATCCACGAGGTCACCCTCAAGCTGCTGGGCCTCATTGAAGACACGGTGGAGATGACAGATGAGGGGAGCCCACACCCGCTGGTGGGCAGCTGCTTCGAAGACCTGGCcgagGAGCTGGCCTTCGACCCCTATGAGACGTATGCTCAAGACATCCTACGGACTGGCTTCCACGATCACTTCCTCAGCCAGCTGTCTAAACCGCGAGCTGCCTTCTACCTCCAGTCTATATGCGAAGGCTTTAAGGAagcagtccagtacgtcctgccACGGTTACTCCTGACacctgtctatcattgtctccaCTATTTTGAGATCTTAAAGCAACTGGAGGAGAAAAGTGAGGACGAGGAGGACAAGGAGTGTCTGAAGCAGGCCATCACGGCGCTGCTCAATCTGCAGAGTAGCATGGAGAGGATCTGCTCCAAAAACATGGCCAAGAGGAGGCTGAGCGAGTCGGCCTGCCGCTTCTACAGCCAGCAGATGAAGGGCAAGCACCTGGCCATCAAGAAGATGAACGAGATCCAGAAGAACATTGATGGCTGGGAGGGCAAGGACATCGGCCAGTGCTGCAACGAGTTCATCATGGAGGGGACGCTGACACGCGTGGGCGCCAAACACGAAAGGCACATCTTCCTCTTCGACGGCCTGATGATCTGCTGCAAGTCCAACCACGGCCAGCCGCGCTTGCCTGGCGCCTCGTCCACCGCCGAGTACCGCCTCAAGGAGAAGTTCTTCATGCGCAAGGTGCAGATCAACGACAAGGACGACAAGGAGGGCGAGTACCGGCACGCCTTTGAGATCATCCTCAAAGACGGCAACAGCGTGGTGTTCGCCGCCAAGTCGGCCGAGGACAAGAATGGCTGGATGGCGGCGCTCATCTCGCTGCAGTACCGCTCGACGCTGGAGCGCATGCTGGACTCGGCCATGctgcaggaggagaaggaggagcaaATGAGGCTGCCCGGGGCGGAGCTTTACCGGTTCGCCACGCCCGACTCTGAGGAGAACGTGGTGTTCGAGGAGAACGTGCAGTCCAAGTCGGGCATCCCTATCATCAAGGCGGGGACAGTGCTCAAGCTCATCGAAAGGCTCACCTTCCACATGTATGCAGATCCAAATTTTGTCCGAACATTTCTAACAACCTACAGGTCCTTCTGCAAACCTCAGGAGCTGCTGGGTCTTCTTATGGAGAGGTTTGAAATCCCAGAGCCAAAGCCCACAGAGGCAGACCAGATGGCCATAGAGAACGGAGACCAACCTCTCAGCGCCGAACTCAAACGATTTCGCAAGGAGTTTGTCCAGCCAGTCCAACTCCGAGTACTGAATGTATGTCGCCACTGGGTGGAGCACCACTTCTATGACTTTGAGCGGGACTGCCAGTTACTGAAGCGTCTGGAGGAGTTCATTGCATTGGTGCGAGGCAAGGCCATGAAGAAGTGGGTGGAGTCCATCACCAAGATCATCCAGAGGAAGAAGCAGGCGCAGGCCAACGGGCCCAGCCACAACATCACCTTCGAGACCTCGCCGCCACCCATCGAGTGGCACCTCAGTAAGCCGGGCCAGACAGACCAGTTTGACCTCATGACCCTCCACCCAATTGAGATCGCCCGGCAGCTCACACTGCTCGAGTCCGACTTCTACAGGGCGGTGCAGCCATCAGAGCTGGTGGGCAGCGTGTGGACGAAGGAGGACAAGGAGCTGAACTCTCCCAACCTTCTGCGCATGATCCGCCACACCACCAACCTCACGTTGTGGTTCGAAAAGTGTATCGTAGAGACGGAGAACCTGGAAGAGCGGGCAGCGGTGGTGGCGCGTATCATCGAGATCCTGCAGGTGTTCCAGGAGCTCAACAACTTCAATGGCGTGCTGGAGGTGGTCAGCGCCATGAACTCTTCGCCTGTCTACCGGCTAGACCACACCTTCGAGCAAATTCCAAGCCGACAGCGGAAGATTCTGGAGGAGGCCCACGAACTGAGCGAGGACCACTACAAGAAGTACCTGGCAAAACTACGCTCCATCAACCCCCCCTGTGTCCCCTTCTTTGggATCTACTTGACGAACATCCTGAAGACGGAGGAAGGCAACCCTGACTTCCTGAAGAGGCATGGCAAGGAGCTGATCAACTTCAGCAAGCGACGGAAAGTGGCCGAGATCACCGGGGAGATCCAGCAGTACCAGAACCAGCCCTACTGCTTACGGGTGGAGAGCGATATCCGGAAGTTCTTTGAAAACCTCAATCCAATGGAGGACAAGGCAGAGAAGGAGTTTGCTGACTATCTGTTCAACAAGTCGCTGGAGATCGAGCCTCGGAATGCCCGGTCGTTGCCTCGATTTGTGGGGCGGCGTCCGAGCGCCCTCTATGGACGCAACGCCCCTGCTATTAAGCCCAAGAAGTACAACTGCCCGCTCAAGTCGCCCGGCGTGCGCCCGTCCTCGGTGCGCCCGGGCACCATGCGCCACCCGACGCCACTGCAGAACGAGCCACGCAAGATCAGCTACAGCCGCATCCCTGACAGCGAGATGGAGAGCGCCGCCTCTGCGCCCAACTCGCCGCGCACGCCCCTCACGCCGCCGCCGGCCTCGGCCGCCTCCAGCTCAACGGACATCGGCAGCGTGTTCGACTCGCCCCAGGGCCCCTCCAGCCCCTTCCACTCCAACTGCGACAGCATCTTTGCCCCGGTCTCTTTACCACACGGCCCACGGTCCTCCTCAGTTTCTTCCATGGTGAGTCTCCACAGGAGCACTGAAGACGCCACCGTCCCCCCGCCTGTGCCCCCTCGCAGACGCCCCGAATCCGCCCCCGCTGAATCTTCCCCTTCGAAGATGATGTCCAAGCACTTGGACAGCCCCCCCGCCATCCCTCCACGGCAGCCCACCACCACCAAGGTCTACTCGCCGCGCTACTCGCTCTCGACTGAGCGTACCTCCTTATCGGAGCCGCCTGACAGCCCACCCACACTGCCACCGCGGGAGCCCGTGAGAACGCCGGACGTCTTCTCCAGCTCCAACAGCCCCCTGCACCTGCAGCCACCCCCGCAGGGCCGCATCCGCAGCAGCGAACCCACGCTGAGCCAAACCTTCTTCCCTCCCTCGCCGTTCGGCCCGCTCACCCCGCCACCACCCCCGACTCCCTCGCCCTCGCTGGGGCCGCGCAAGCACCTACCATCCCCGCCCTTACCACTGCTGGGGCCCGGTGGCCCAGACTGCTGCGGCGACTCAGCCCTCCTCCCTCCGGGGGGTGCAGCTGGCCCCCCTGTGCCCCCCCGCCAGAGCACCAGCAGCGCTGCTGCCCAAGCCATCCCCAAGCTCCCCCCCAAAACGTACAAAAGGGAGTCGGTGTCATACCCGTCCCTTGCGCATCGAGACGGCCCGCCCCTGCTGGAGAATGCCAACCCCTTTTAAAAAGACTTGTGTATGTGATCTGGGGGAAATTATTGAACACTAAAGACTTGGACAAAAAACAACATTAATTGTGATGTTGactttgagaagaaaaaaaagacaatACCAGTGTAGATTCTTAGCTACCTGGAAAAATAATCATGTGCCCttataaaaaaaatacttaaacGAAAGATGATTGTCCTTTTTCATTCGTGCAGACCATTTGGAGATTCCCTATAAAaatcattttgggggggggggggtcttactgttttgttttattgtatgtgtttgtttgtttgtacagTATGTTGTTTGTCATCGTCCaatgtttatttcatttttattttttaagtgaATCGATTGCAGCATTACTTGTCTATGAGCTCGGTGGCCTACCCATGCACATACAGCTTGAACCGTAGTAAACCATGAACCAGGACCACACAAGTCCACCGCACGCTGGAGGACGGGACGATAAAGACTGCAGCCCAGTTTGATCAGACTCCAGGAGAAATCCACAAACTTAATAGTGTTTTAACTCCCTGTGTATGGGCTAAACGATCTACCAAAGTGGCCCATATTGACCAGAGACGGACCAGAGAGGACTCTAGCTATCACGGTGTTGCAAACCCATTCAACTCGCCCATAACAAATGTCTGTCGTTCAATCCACCTCACTCAGATGGAAAAAGGGACTTGGGAAATCACGTTGTTAGATAGTTTTTAAGGCTTAGAGACTCAGTCCGgagctagcttttttttttttttgtgccagTAGATCGACCAGAGTACCATGATTTAAGGCAGGGTTTCCCAACCTCGGTCCTGGGTGCGTGTTTAGTTGTTTTTGCCCCagcactacacagttgattcaaataatcaaagcttgatgatgagtttgttaattgaatcagatgtgtagtgttagggcaaaaaaaaTACATGTGGGGGGGtccaggactgagtttggaaaACCCTGATTTAAGGTACCCATCCACACCAAAGAGGTACTTTTCAAGAAACACAAGAAGTGATTGTTCTTAAGTTTGTGTTAGTACTTTTATGTTCTGATTCATTTCTGCCAATGAGTATGTAAAGATAATTACGATTTGACTTCTTTAAACAAGGGAATAAAAGTGTTTCTACCACTCTATGCAGTAGGTCCGCTATGAAACTAGTGAAGAGCTGGCTACGGTCCTGAATGCCCAGTTagaatatatttgtttaatgatTCCCTTCCTTCAAAATGGTCACTGATCTGACTGAAGCTAATCAAGTTATGTACTGGAGACCTTGCTCTATCGGTAACAAAGAGTCTGTATGGAAATGTAGTTGCTAATTGTTTACCTCAAACTTCAGCTTGTGTATATGCCCCATACATGCAAGACTCATTTTAAGGtttacatttgtcatttagcagacactcttatccagagcaacttacagtagtgagtgcatatgtttttcgtactggtcccccgtgggactCGAACTCACAACCTTGGCATTACAAGCGCCGTGCTCTATCAAATGAGCCACGTTACAATTTCTTAACTCATGAAACCACACAATCCTTAGTTTTAGACTACAATATGATTTTGCTCATGGGTGTCAGGAGATAAGCCCCTTTCTGTCCAATGAGGTCATTTCTGGGCACGGTTCGATTTACACAGGCAATATTTCTGTCAATTCAGGGGACCCCTTTTGACTCAAGTGCACCAGGCAAACGTTCCGTATAACCCCATTTTAAaaggaaggatgaagggatgcCTTTTTAAAGCATCCAAAAAGGGCCATAGCAAAATGCAGTTGAATTGCTGGCGCTACCTAGATGGCTAAATATGAATGACTAGCCACAACAAATTGTCTTTGTCCTTATTTTGCTTGATCATGAATACAATACTTTTAATCACAGGTAGACCACACTCCAGTCAAATGTTACCAACTCACTATGGAATGGTCATATATTAACAGTACATCTTGAGTACACCACATTTTAATTAAGAGAACAATATCCTGTGACTGGCAATAGTTTATGTATGTAAAATCAAACTATTTGGTTTATTTGAAGAAGTGCAAGTGTTCCACCTTCAGGTTATACTATGGTTTGTTCCCTAGGGTCAAAATGTGGGCTGTGAGtcacccaaatggcaccccattccagACACAGCACACTGCTTTTGATGAGCCCGAagtaccctggtcaaaagtagtgtactatatagattccatttgggacacacccaatAGCCTAAAGTAATTAACCTGGGTTTGTCGTCTTCATTGTAATCATTCTTGGCTATTCTCCCAGGTTTCTTCCCAACGGACAAAGTGCCATAGGGTCATCCTGTCAGTTGCTTCCAAAAACATGTTCTTTTTCTGGCCCATACACTATGTAATGGCTGGAGTTTGAGAATCATAGAAATCGAATGACTAGAACATGCAGTCACATTCAAGTCACGTCCCGCGATGGGTCAACTGACGGCAATATCAGTGTACCAATATCTAGGAAAGTAATAATGACCTTTTAAGGAAAGTTACTTGAATTTAGAGACCAGGttgtatgtgtgtactgtatgtatgtgatcATCTCATTGACAGTGAGTCTGGTGTTTACCAGCAATACTGTGAAAAAGCCTCGGCAATAGAGACCTCTTTAACCCACAACACGTTGATGCAGTGTCAGAAACAATAATTGTGCCACATCGGTAATAAACTTATACTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650729 lncRNA upstream 87723 34607455 ~ 34607674 (+) True G1442005
TU1650728 lncRNA upstream 88308 34606853 ~ 34607089 (+) True G1442004
TU1650717 lncRNA upstream 105375 34589362 ~ 34590022 (+) True G1441995
TU1650712 lncRNA upstream 126121 34568486 ~ 34569276 (+) True G1441990
TU1650711 lncRNA upstream 132710 34562355 ~ 34562687 (+) True G1441989
TU1650816 lncRNA downstream 72749 34842574 ~ 34842788 (+) True G1442086
TU1650818 lncRNA downstream 127519 34897344 ~ 34903155 (+) True LOC110493796
TU1651214 lncRNA downstream 137424 34907249 ~ 34907477 (+) True G1442446
TU1651215 lncRNA downstream 137668 34907493 ~ 34907720 (+) True G1442447
TU1651300 lncRNA downstream 247314 35017139 ~ 35017372 (+) True G1442518
XM_036949775.1 mRNA upstream 764 34609813 ~ 34694633 (+) False map4k3a
XM_036949774.1 mRNA upstream 764 34609814 ~ 34694633 (+) True map4k3a
XM_021568271.2 mRNA upstream 112082 34580981 ~ 34583315 (+) True LOC110493788
XM_021568269.2 mRNA upstream 137073 34510607 ~ 34558324 (+) False slc8a1a
XM_036949780.1 mRNA downstream 7038 34776863 ~ 34780593 (+) True LOC110493791
XM_021568279.2 mRNA downstream 17465 34787290 ~ 34802322 (+) False LOC110493794
XM_021568280.2 mRNA downstream 17465 34787290 ~ 34802322 (+) False LOC110493794
XM_021568281.2 mRNA downstream 17465 34787290 ~ 34802322 (+) True LOC110493794
XM_036949782.1 mRNA downstream 74525 34844350 ~ 34903202 (+) False LOC110493796
TU1650494 other upstream 392788 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 400068 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 718922 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1170863 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1739340 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 399073 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 399073 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 904139 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 977047 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1469119 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile