RNA id: XM_036948373.1


Basic Information

Item Value
RNA id XM_036948373.1
length 801
RNA type mRNA
GC content 0.70
exon number 1
gene id LOC118940117
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34814353 ~ 34815153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGGCTTCATCTAATTCACTGAGTACCGCTGTGCCCCCACTGCTGTTCCCCCACCGCTGTGCCCCCACTGCTGTTCCCCCACTGCTGTGCCCCCACTGCTGTTCCCCCACCGCTGTGCCCCCACTGCCGTGCCCCCACCGCTGTGCCCCCACCGCTGTTCCCCCACCGCTGTGCCCCCACTGCCGTGCCCCCACCGCTGTGCCCCCACCGCTGTGCCCCCACCGCTGTGCCCCCACTGCTCTGCCCCCACCTCTGTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCACCACTGCTGTTCCCCCACCGCTGTTCCCCCACCGCTGTGCCCCCACCGCTGTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCACCACTGCTGTTCCCCCACCGCTGTGCCCCCACTGCTCTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCCCCACTGCTCTGCCCCCACCTCTGTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCACCACTGCTGTTCCCCCACCGCTGTGCCACCACTGCTGTTCCCCCACCTCTGTGCCCCCACCGCTGTGCCCCCACTGCTCTGCCCCCACCTCTGTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCCCCACTGCTCTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCCCCACTGCTCTGCCCCCACCTCTGTGCCCCCACCTCTGTGCCCCCACCTCTGTGCCCCCACCGCTGTGCCCCCACCGCGGTGCCCCCACCAGTGTTCACTAATACAACCACCTTGGCACGCTCACAACTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651062 lncRNA downstream 32173 34776754 ~ 34782180 (-) False G1442316
TU1651063 lncRNA downstream 32173 34776806 ~ 34782180 (-) False G1442316
TU1651061 lncRNA downstream 32173 34778015 ~ 34782180 (-) False G1442316
TU1651065 lncRNA downstream 32173 34778015 ~ 34782180 (-) True G1442316
TU1651103 lncRNA downstream 37759 34773701 ~ 34776594 (-) True G1442347
TU1651204 lncRNA upstream 86735 34901888 ~ 34903193 (-) True G1442442
TU1651226 lncRNA upstream 99813 34914966 ~ 34915185 (-) True G1442458
TU1651440 lncRNA upstream 110395 34925548 ~ 34929740 (-) True G1442651
TU1651481 lncRNA upstream 160939 34976092 ~ 34980615 (-) True LOC110493799
TU1651500 lncRNA upstream 200035 35015188 ~ 35015396 (-) True G1442694
XM_021568284.2 mRNA downstream 25992 34785537 ~ 34788361 (-) True gemin6
XM_021568283.2 mRNA downstream 27084 34785537 ~ 34787269 (-) False gemin6
XM_021568273.2 mRNA downstream 209283 34590849 ~ 34605070 (-) False tmem178
XM_021568272.2 mRNA downstream 209286 34590849 ~ 34605067 (-) False tmem178
LOC118940658 mRNA downstream 317684 34496620 ~ 34496669 (-) True LOC118940658
XM_021568288.2 mRNA upstream 147611 34962764 ~ 34970771 (-) True LOC110493798
XR_005037259.1 mRNA upstream 150113 34965266 ~ 34965392 (-) True LOC118940673
XR_005037260.1 mRNA upstream 151056 34966209 ~ 34966342 (-) True LOC118940674
XM_021568289.2 mRNA upstream 163391 34978544 ~ 35008424 (-) False LOC110493799
XM_021568290.2 mRNA upstream 163833 34978986 ~ 35008419 (-) False LOC110493799
TU1651088 other downstream 93561 34720427 ~ 34720792 (-) True G1442336
TU1650874 other downstream 453047 34360102 ~ 34361306 (-) True G1442139
TU1649593 other downstream 1398000 33413124 ~ 33416353 (-) True LOC110493763
TU1649328 other downstream 1427825 33385937 ~ 33386528 (-) True G1440786
TU1649323 other downstream 1431634 33381901 ~ 33382719 (-) True G1440781
TU1651205 other upstream 88929 34904082 ~ 34904616 (-) True G1442443
TU1651483 other upstream 245046 35060199 ~ 35061975 (-) True LOC110493800
TU1651773 other upstream 413601 35228754 ~ 35232154 (-) True G1442932
TU1652432 other upstream 800551 35615704 ~ 35617922 (-) False LOC110495171
TU1652434 other upstream 800551 35615704 ~ 35617922 (-) True LOC110495171