RNA id: XM_036949782.1


Basic Information

Item Value
RNA id XM_036949782.1
length 3069
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110493796
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34844350 ~ 34903202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAATGCGCACAGCTGTCAGAATTCTAGTTCGCTTGGTCGACATTCTGTTTTAGAGCCACGTGCATGCAACTTTCTGGACTGCTTTTTGTGATTTATTTCTCAGGTGTTGAATTAATCTAACATCAAAAAATTGTTGCTATTCATCAACAATGTCTCTCATTGAGGAATACGAGGAAGGGGAATACGAGAGAGCGCCTAAGCGTCTCAAGACGATGgatgtggaggagggagaggatttggaggagggggaggattcAGATACAGCTTCCGCGGGGCTGCTAGGAGATGAGGAGGATGCTACGGGGACCGCCGGGGAAAACCGGGCCCGGTGGTCAACAAAAAAATATGGGTCTGGAAGAAAGgacAATGGGGAGGATGCCCACAGGATCGCCCCCTCTCCGGTGGTCCACGTGCGGGGGCTCTGTGAGTCAGTGGTGGAAGGGGACCTGGTGGAGGCCCTGGAGAAGTTTGGCAACATCTGCTACGTCATGATGATGCCGTTCAAGCGTCAGGCGCTGGTGGAGTTTGAAGCCATGGAGAGTGCCGACCAGTGCGTGACATGCGGTGCCAACGAAGCGGTCTACATTGCCGGCCAGCAGGCCTTCTTCAACTACTCCACCAGCAAGAGGATCACGCGGCCAACTAACGCCGATGACCCCAACAGTGGCAACAAAGTCCTGCTCCTCTCCATTCAGAACCCCCTCTATCCCATCACCACTGATGTTCTGTACACAGTCTGCAATCCCATAGGCAACGTACTGCGCATTGTCATCTTCAAACGCAATGGAATCCAGGCCATGGTGGAGTTCGAAACTGTCAAAAATGCCCAGAAGGCAAAATCAGCACTCAACGGAGCAGACATATACGCCGGCTGCTGTACCCTGAAGATAGAATACGCTCGGCCCACGCGACTCAACGTCCTCCGCAACGACAATGATAGCTGGGACTACACCAAGCCCTTTCTCGTCAGGCGAGAGCGGGGGAAGGGGAGGCAACGCCAGGCCATTCTGGGAGAGCATCCGTCCTCCTACAGCGACAACGGCTATGgGCCACACTGCCCCCTGCTGCCCGTGCCCAGCAATAACAGGTACAAGAGGAGCTCTCTCCATGACGCCCAGGAAGTGGTCGCCTACCCCCTGCCCCAGACCTCCTCCTATATGGGCCACGCCTCCAGCTCGTCGGTCGCCATGGTGAGCGGCCTGCACCCCGCCAAGATGAACTGCACCCGCATCTTCAACCTCTTCTGCCTGTACGGGAATATTGAGAAGGTGAAGTTTATGAAGAGTGTCCCGGGCACCGCACTGGTAGAGATGGGAGATGAGTACGCTGTGGACCGATCCATCACACACCTTAACAGCATCAAGGTGTTCAGCAAGAGGCTCAACGTCTGtGTGTCCAAGCAGCACGCGGTCATCCCCAGTCAGGTGTTTGAGCTGGAGGACGGCAGCAGCAGCTACAAGGACTTCGGCATGACCCGGAACAACCGCTTCAGCAGCGTGGGCCAGGCGTCCAAGAACATCATCCAGCCGCCCGCCACTGTGCTGCACTTCTACAATGTCCCGCCCTGCATCACTGAGGACGAGCTGCAGAGGTTATGTACAGAGCATGAGGTACCCGGTTTCATCAAGTTCAAAGTCTTCGATGCAAAACcCAGCTCCAAAACGATCTCAGGCTTATTCGAATTTGACAACAAGACACACGCTGTGGAGGTTTTAACAGTCCTCAACCACCACCAGATCAGAATACCAAATGGTTCCAACCCTTACACCCTCAAGCTTTGCTTCTCCACTTCCTCACACCTCTGAGACCTGGAAAAACCAAGATGGCCGCCGCACTAGTACGCCATCAACAAGGAGAGAAGCGGATCGGGGAGAAAGGAAGAGCACCCAATGAAGGAGAGCGAAACAAACAACGCGAGAGTGGAGAGTCAACACACTTTCTCGGACCTGAGAATGGAAAAGCGAGTTAAAAACACtcaagatccccccccccccccccccatatgaaCTATCTTAATGGAttatttttgttgtatttttttcctTTGTAATTATTTGAAGGAGCTGCAAGTGGTTGGGCTGACAGTTGTAACtggcagagggagaggaaagcCCAACTATGCATCCTGGCAGGGCTGCTTACTCTGCACCACAATTGATTTGACATTTCCTGTGCTGACTTGATGAGGGCCGAATTTGACTTCTGTCTTTTTGTTGCGTGACCTATTTTAGTGGTCAAAAGACAGTGGCCTACGGTACATTTTCATTCCTAAACTGATGTCAATGGCCAGTGGCCAGTTTTATAACTTTCAGAAGATTCCCAAAGGGCAGCTGGGATAAAAAATTACAAATTGAAACCAATGGAGGGCAAAACAATTTAGGCGGTAGAGGCCTGCTCTcagctaggggaaacactggtggaAACTAGTGGAAATGCGTGTGCCTAACTCTGCAATATAAGAGATTACTCAGTGTTTGTAAATGAACAACCTGTTCACATTATATTGTACATATGTGTGTATAGCAGTTGAGTGTGTGTCCGGGCACTATGTTAATAAGAGCAGTTCCTTATGGAAAAAACTACATTTCACATGTGAATTGTTCcaagaaaaaaacatttccatGTGATTTCAAATCATAtgattttccacatgtgaaatcagGTGGTTTTTCTGTAAGGGGTGTTTCTATACCTTTTCTGTCGATGGTCCTCTTCTTTGGAGGGCCATTTGAATTAAAACTAAAATGAACACTTGAGACTGTCAGCTTACTATCTGATGGTCAGCAGCAACCCGCCATGTCGGTCCCTGGATCTAGGGTTGGAAAATACTCAGCCGTTACGAGACGTCTGTCTTCTCTCAagactacattttttttttgaagaagaagaagacatttCAAACTGTGTTTCAAGCGTTCCAAACCCTGAAGGTCCATGCGGGTTGGATGTGTTTAGTGTTCCCAGTTATACTGTGTCTCCATGTTTGTACTTGGCCCACCACCACCACGTCTGAAGAATTCACTGTGAGCATGTGCAGTCATTAAAACATTTGCCAGTCGATACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1650816 lncRNA upstream 1562 34842574 ~ 34842788 (+) True G1442086
TU1650759 lncRNA upstream 76125 34767025 ~ 34768225 (+) True LOC110493792
TU1650771 lncRNA upstream 121839 34722298 ~ 34722511 (+) True G1442041
TU1650729 lncRNA upstream 236676 34607455 ~ 34607674 (+) True G1442005
TU1650728 lncRNA upstream 237261 34606853 ~ 34607089 (+) True G1442004
TU1651214 lncRNA downstream 4047 34907249 ~ 34907477 (+) True G1442446
TU1651215 lncRNA downstream 4291 34907493 ~ 34907720 (+) True G1442447
TU1651300 lncRNA downstream 113937 35017139 ~ 35017372 (+) True G1442518
TU1651307 lncRNA downstream 120183 35023385 ~ 35023589 (+) True G1442525
TU1651329 lncRNA downstream 148944 35052146 ~ 35052493 (+) True G1442547
XM_021568279.2 mRNA upstream 42028 34787290 ~ 34802322 (+) False LOC110493794
XM_021568280.2 mRNA upstream 42028 34787290 ~ 34802322 (+) False LOC110493794
XM_021568281.2 mRNA upstream 42028 34787290 ~ 34802322 (+) True LOC110493794
XM_036949780.1 mRNA upstream 63757 34776863 ~ 34780593 (+) True LOC110493791
XM_036949776.1 mRNA upstream 74525 34695397 ~ 34769825 (+) False LOC110493792
XM_021568286.2 mRNA downstream 20480 34923682 ~ 34948213 (+) False LOC110493797
XM_021568287.2 mRNA downstream 20480 34923682 ~ 34948213 (+) True LOC110493797
XM_021568293.2 mRNA downstream 219347 35122549 ~ 35132583 (+) False LOC110493801
XM_021568295.2 mRNA downstream 219347 35122549 ~ 35132583 (+) True LOC110493801
XM_021568298.2 mRNA downstream 236394 35139596 ~ 35183239 (+) False LOC110493802
TU1650494 other upstream 541741 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 549021 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 867875 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1319816 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 1888293 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 265696 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 265696 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 770762 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 843670 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1335742 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile