RNA id: XM_021568292.2



Basic Information


Item Value
RNA id XM_021568292.2
length 3362
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110493800
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35023723 ~ 35061975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGACAAACATTTGACGCGGATGTAGAGAGTGTGTAACCTGTAAAGATAGCACCACCTCCCGATCATTTTGTTAGGCTGTGATACCCTGGTAATTTGTACATACATTTACCGATTTCGGGGAGAAGTTACTTCTTCAGATTCACCATCACTTCTGACGGGACCCTCCGGAGGATAATAATCAATTGAGTATTGATACACACCCAACTAAAAAGTAATTTTACAGGGACGTTAAAATGCTACGGATTTACTTGTGCTTGAGTGTTGTTGTCAACGTGGCCGTCTCGCAGGAAGCTGAGGAACCCATCTCATACACGTGTACAGATGGCTATACATTTGACATGGAACGACAAGAATGCAAAGACATCAACGAGTGTACCACGGTCACCGACGCCTGCAAGGGCGGCATGAGGTGCATCAATCATTTCGGAGGCTACTTCTGCCTGCCCCAGAATGCCCAGATCATCGTTAGTAATGGTGACGACGAGCCCACCGTGGCCCCTCTGGTGGAGGAACAGCCTCCTCTGGCACCCGCCCCTGCTTTGCCTGTCCAACGGGTCATCCAGAGCTCTTTCCAAAGCCAGGGCACCATGCAGTGTGCTGCAGGGTTCGTGGTGGACGACCTCAACTACTGCCGTGATGTGAACGAGTGTGAGGGGAGCAATCCCTGTCAACACCAGTGCTACAACATCATGGGCTCCTACATCTGCCAGTGTGAGCAGGGTTATGAGCTAGCCTCCAACCAAGCCTCCTGCCAAGATATTGATGAATGCGCCTTCTCGAGTTACATGTGCCAGTGGCAGTGTGTGAATCAGCCCGGAGGGTATGTCTGTACCTGTCCCGAAGGATACCAGCTCCAAGGCAACCGAATGTGCCAAGACATAGATGAGTGTGAAACAGGAAACAACTGCCGCGAGGACGAGATGTGTTGGAACTACTTTGGCGGTTTCCGCTGCTACCCCAGGAACCCTTGCCACGAGCCCTATGTGAAGACAGGAGAGGGGCGTTGCAGCTGCCAGTCGCTCACAATTTGCCGAGGCCTGCCGCCGTCCATCGTCTACAAGTACATGAGCATCTCGTCGGAGCGCTCCGTCCCAGCCGACATCTTCCAGATCCAGGCCACGAGCGTCTACCCTAACATGCACAACACCTTCAGGGTCAAGTCTGGCAACGAGGGAGGAGAGTTCATCCTCAGGCGCTCCAGCAACGTCAGTGCCATGCTGGTGATGACCAAGCCGCTAACCGGACCGCGGGAGCATGTGGTTGACCTGGAGATGGTCACACACAACAATGTCCTCAACTACCGCTCCAGCTCTCTGCTCCGGCTCACCATCATCGTGGGACCCTATGCCTTCTAAGTTCCAGTTACAAATTGCTCTTAGGCACAGATCTTAAATCAGTTTACCCGTCCCCATATCTCATATTATCCATTAGAGGATAAAAGGCAAAACTGGCCTTAGATCAGTGCCTAGGGGCACTTTCATCCTACTCAGCCCTCTTACTCCCTCCTAGACCATCACAAGGCCTAACACTCTCTGTACTGCTTGGATCTAATAGAGATATCCACATACTCCCTGCAAGGGTTTCCCATTCATGGTCCTTGTCCTGTGTTGGCTAGTTTTCATTCAAATGGATGGCTGTATAAATTGGGATTGAATGTATATTGTCTGATCTGCTGGTTGAGCACTGGACTGGGTGAAATTGTTTTGTTTTAGCTCAAAGCGTGTAGTCCTTTCTTGGAGATGGAACCATTGGTTAATTGCAGTGAAAACCAACACCCACACATAGCACATACTGGAGGAGCAGGAGGGTGAAATAGCCAGGCCACGATATAGTCACTTTATGCATCACTGGCTAATGATAACATTGTAAGAGCAAAACGTGACTTAAACTGAACACAACTCTTTCTTACTCATCCTTTGCTAAACGTACGTGTTGCACTGTAGCAGGAGAATGAGTTCTCGTCACATTTGAAATCGTTGTGAAATCTCTCATTAGTCTAGTCAAGATGTGTTTTCCTGCAGAGAAATTACCCCGTGTTTGAAATCACACTTGCCCTTTTTATCTTTTACCATAGTTGCCAAGTGAGGTTCACAATCGCATCATATCCCCTTTAAGATCACTGATTTTGTTTGTTTGGAGAGCTTTTCATTGATGTAGTTGAAAAGAAACGTACAGTAATGCAATGTGATGTCAACATAAATACCAATTGTCGTTGAAAAGAGACATATCTGTTTCAGTTATCTTGAAGAGAGATAATCTCTATTGGACGGACTATGAGCTTCTGACCAAACTACGcgagattttagttctgggttaaccgagattAGAAGAGAGACAAAGGCACCTAAAACAGTCAAGCTTATTGGTGAAGTGTGATTTAATGGGTTACAAGTGTAGTGATTTGGTGAGGACTGTGATGGAACCGTTTGCAGTGTGTAGTAATCCAATGGCATCCTTAACGAATGGAAATGTATGATCACGTCAACCCTCATCGGAGAGTTGCTCGGCAACCTCTGTCCAATGGGAATAAAGCAATAATGCTTTTGGACGCAAAAGTGATATTTTCAGGAAATCATTGGCAGTGTTGTTTGGTCATATAGGCAGGGGAATTGTTGCTTAAcatgtctgtatgtgtgccaGAGTGCCTCTTGATCCTGCACAGAACTTCCAGTCAGCGATCTGCCACAAACAGTTAGTCAGGTCATTTCGACACAGAGTTCCTTTCATAAGGAGTCATTGAATCACAATTTGAGATTAACTCTGTTTTTTTAGTAGAGGATTTGACACCATGAgactttttaaaataaatataatgTTTGACAATCAACAAGGAAGCTCAATTGAATCAAAAGGTTCCCACTCCGAATGACATGCAATTTCAACTGTGTATGTACTATATATAGGTAGGTACAGTGTAAGTACAGTATTCCATATCTCTGTGGTTGGAACAGTCAATTTGAACAAATGTCTGTTTATAAAAACTGTTAAAAAGGTAACAGTTGAAGACCTACCATAAATAACAATGTGTACCTACACTGTGGTTGCAATGtctatataatatacctatataaTTACCATGTAGATACATAGTTCTGGCAACAATATTATGTGGAAACAAATGTGGTTACATTCCAATATGAAAATTATTTATTGGGGTGATaataaaatgtaattgaagaCTGAAAATTGCCAATATAAATGTATGTCTTATTTTATACGAAGGAAGTCCACGTGTAGCTCTAATATATAAAACATTCATGCGACTTAACAttgttatatatatttacacCAAGCACAAGTTTTTCACAGATTTTGAGAATATtcacttcttttttttcttttttaaaataaaatatacattt

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1651508 lncRNA downstream 1240 35022182 ~ 35022483 (-) True G1442702
TU1651505 lncRNA downstream 3845 35019650 ~ 35019878 (-) True G1442699
TU1651500 lncRNA downstream 8327 35015188 ~ 35015396 (-) True G1442694
TU1651481 lncRNA downstream 43108 34976092 ~ 34980615 (-) True LOC110493799
TU1651440 lncRNA downstream 93983 34925548 ~ 34929740 (-) True G1442651
TU1651486 lncRNA upstream 2083 35053865 ~ 35054961 (-) True G1442680
TU1651485 lncRNA upstream 8239 35060021 ~ 35060530 (-) False LOC110493800
TU1651487 lncRNA upstream 11364 35063146 ~ 35063719 (-) True G1442681
TU1651482 lncRNA upstream 12711 35064493 ~ 35064986 (-) True G1442678
TU1651530 lncRNA upstream 24909 35076691 ~ 35076892 (-) True G1442724
XR_005036700.1 mRNA downstream 4645 35014063 ~ 35019078 (-) True LOC118940098
XM_036949783.1 mRNA downstream 15105 34978986 ~ 35008618 (-) False LOC110493799
XM_021568289.2 mRNA downstream 15299 34978544 ~ 35008424 (-) False LOC110493799
XM_021568290.2 mRNA downstream 15304 34978986 ~ 35008419 (-) False LOC110493799
XR_005037260.1 mRNA downstream 57381 34966209 ~ 34966342 (-) True LOC118940674
XM_021568299.2 mRNA upstream 131584 35183366 ~ 35199206 (-) True LOC110493803
XM_021568300.2 mRNA upstream 151766 35203548 ~ 35205645 (-) True zgc:194981
XM_021568301.2 mRNA upstream 167972 35219754 ~ 35227920 (-) True LOC110493805
XM_036949789.1 mRNA upstream 181542 35233324 ~ 35238570 (-) False polr3f
XM_021568306.2 mRNA upstream 181542 35233324 ~ 35238873 (-) True polr3f
TU1651205 other downstream 119107 34904082 ~ 34904616 (-) True G1442443
TU1651088 other downstream 302931 34720427 ~ 34720792 (-) True G1442336
TU1650874 other downstream 662417 34360102 ~ 34361306 (-) True G1442139
TU1649593 other downstream 1607370 33413124 ~ 33416353 (-) True LOC110493763
TU1649328 other downstream 1637195 33385937 ~ 33386528 (-) True G1440786
TU1651483 other upstream 8417 35060199 ~ 35061975 (-) True LOC110493800
TU1651773 other upstream 176972 35228754 ~ 35232154 (-) True G1442932
TU1652432 other upstream 563922 35615704 ~ 35617922 (-) False LOC110495171
TU1652434 other upstream 563922 35615704 ~ 35617922 (-) True LOC110495171
TU1652640 other upstream 928199 35979981 ~ 35987009 (-) False LOC110493173

Expression Profile


XM_021568292.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_021568292.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021568292.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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