RNA id: XM_021568295.2


Basic Information

Item Value
RNA id XM_021568295.2
length 4931
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC110493801
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35122549 ~ 35132583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aAACCGGAAGTCATTGTTTTATTACTACCAGCAGCAGGCAGTAAACGTTTAGAAAATTCGAATCATCTCAGCAAGAACAGTAGAGGGGCAAAGTCAACTCCGAGATCTCTGAGCTAGTAACGAACTCTATTTTCATTTCGAGACGATTTTAAAAGGGATGAAATGTCAGTCTCACTGTGTATACAGTGTCAGACACAAACCACTGTGTTTAGTAAGACCTGCAACAGTTGTTTCTTTAACCACCCAAAAGAGAAGAAGTTGTTACAAGCAATGAAGAAGTATGATTACGAATGGGGACACAATGATTGCGCCAACTATAATAATAGCTCTCAGATACTGACTTCCACAAAAGTATTGCTCTACAAATTACACACTCTAGGATTTGTTCCCCTTCTCCTGCTTGGAAAAAGGAGACGGGGAACAAAACATATCGATATGGATTCCTTTTGCCCTCACCCCCAAGTCATAAAAGAAACGGGCTCTATTGAAACATTGAGAAACATTTATTTAGGTCTTCTGAATGTCACACTCGGCACTGAGTCCCAATGTCAGTGCTCCCCAGTGTCTCCAGAGCCAGATGGGACCCCCGCACCAGCCGAGGTAGAGGGAACACCTACAACTATCGATCCAGTGGGAACCTCTGCATCGACAGAGCTACACAGAATACCCATCTCCATCCAATTGAACGTAATACCAACAGAAACGGGCATACCCAACACACTAATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAACTATCAATCCAGTGGGAACCCCTACAGCTATAAATCCAGTGGGATTCCCTGCACCAACCAATCGAGACGGAATCCCCATATCTTTACAACTGAACCTAATCCCCACACCAACAGAGCCAGGCAAATCCTGCACACCAGCCATTCCAGTGGGAATCCCTACACCAACCAATCTAGTGGGAACTCTTACAGCAATTGATGCATCAGGAACCCCTGCACCAACTATGCCAGATGGAATTCCCACATCCATCAGCCTGAACAAAATCATCACACTAACTAAGCCAGGCAAACACTCCACATCAACCAAAACATTGGGAACCCCTTCACCAATTAATTCAGTGGGGACCCCTGCACCAGCCGAGCTAGACGGACTCCCCACACCAACAGACCCAGCCAAACCTTCCACACCAACCAAGCTAGATGGAATCCCCACATACATCTGCCTGAACGGAATCCCCACATCCATCTGCATGAACGGAACCCCCACACCAATACAGCCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCTCACCAATAAAGCCAGGCAAACCCTCCACACAAAACAATCCAGTGGGAAGCCCTACACCAATGGATGAAACCTCTGACTCCTCTGAGCACCAGGACCAAGAAATGCAAAGGCCAAAAAGAAAAATGTGGAGAGATGGAGATCTAATCGAAGCTGAAGACAGTGCAACCACTCAAGCACAAAAGAGAATAAAAGCCACAGAAGAGTGTCTGAACATGGATACGGATAGGCCCACGGTGTCAAGACATGCAGAGGTAGACACTGAAGTATTAGATCAACTAGAAAAGAGCAGCATTGTACAAGCAACCAACAAGCAAACTTTGTGGGCTATAAACTGCTTCAAAGACTGGCTGGCAGAGAAACAGATGATAGTGGATTTTTCAACCATTGAGAAATCTGAAATGAATGTGCTCTTGCGAGATTTTTACTGTTCTGTTCGAAGGGGTAAAGGTGGGGAGTATTGTATCCCGAGCTATATCGGAATCCGGGCTGGCGTGAACAGATTCATTAACCTCCCTCCCCTTAGCAGAGCCTGGTGCTTGATGAAGGACAGTGAGTTTACCTCCTCTAATAATGTATTTATTGGGGTACTAAAGAAAATCAGACGAGAGGGCAGGGACAAAACTACCCATCCTAAGGTGATTAAAGCACAAGaccttgagattcttcaaaactCTCCTGTGCTAAGCCCCTACACACCAAGAGGGCTAGTCAACAAAGTGTGGTTTGATATCCAGTTACACTTTGGCCCCAGAGGAAAGGAGGGCAATAGGCGGCTAACGCCACAGTCGTTTGTAATAAAGTACGATGAAAACGGAGCAAAATATGCAACGATGACTTCCAGCGAGGAAAGACAGAACCATAAAGATGCAGAAGAGCAGAACTGGCAGAATCGCTGTGGAATCATGTTTCAGAACCCTGGTAGTCACCTCTGTCCAGTCGCCTCCTTGGAGAAGTATCTGAGCAAGATCCCATCAGATGCCACCGCCCTCTACCTCCATCCTAAGAAAATGGTCATCACCAGTGACAGAATATGGTATAGCCAGGAGCCAATGGGGTTCAATTACCTTTCATCAATGCTGCCCCGACTGTGCCAGGAGGCTGGTACATTGGAAAAGTACACAAACAACTGCTTACGATCTTTGCGCGAGATCATGTCTGTCAGCACACTGATAGTTCCTTGAAAAGTTATTGAAAACCTTCAATGGACAGAAAGAGATCAAATAGGCTCACTGAGTCAAGGCAGTGACACACTTCAGTTTTACTTCCTACCAGCGACATTGTTTTGGTCTTATACGCAAACGGAGAGCTTGCCAAGATATACAGTCCTCACCATATCTATATGGACTATGTATTTTGACACTGAGGCTAAGATTGACATTTTTTGCTCTATATTCCAGCATTTTGTATTTAAGATGAATGAGGCGACAGTCCAGAATTTAACCTTTTGAATTAAGATGATGTTTTAAGGTATAGATTTTGTTTTGCGCTGAGACTTCACTTTTCAGAATTGTAAAGCCTTTTAAGATTTAATTTCACCAACAAGTTTTACTCTACTGGAAACTGTTTAACCATAATAATCCATTTAGGAAATCTAAAGTttagggcgggggggggggggggaatcgcAGCAATCGCAGGATAATAGGGCGGATAGATTTTTGTatgtgtgaaatatatttttttggggtgACTGGAAGCAATTTGATGTGATACTTCCTAGATGTTTTTACATGTGTACACCACTTTGTAGACCATCTGTTGTGGCAAATGGTCATACAGCTGTTTTATCAAATTTAATTGTACCCTTCACATAGAAGTGATATTTCCCTTATTTACTAGATCTATTATTTAAAGGTTATGTACCAACTACCTAAAATTACCCGTATCCCCTTAAATTCAAGATTTTGAACTATGTATGCCTCTTTCTCAGAAAGAAATGGAACTTGCAAAACAATTTTGCAAGCTATAATGATAGTGCAGCAGAACCTGTTAGGAGTGCTTGAGAGTTAAGGTAGTAACAAGAAGTGTGGAAAGCCAGATGAGCCAAACATATGTTGCGGGAAGGGACAAAAGGCCCAAGAGACGTTGTAAACCATAGGGAACCAGGAGTAAGACCGCATCGAGAGAACATACGGGGTGAAACAACTTCATCTGAGGGCTGAGAGCATTTTGATGTCGAATATGAGTAATAACAAGTACATGTATCCTAAAGTCTGTAGGCATAGTGAACTTGATTACATTATAATGTTGGCCTACATGCATAATTGTAGCCCACTTTTCCTTCCCTgcactagggctgctgaatcaagtgcacctaccgctaACGGCGCAAAACAAATAGGAACGCAAGGCTTTATCAGAGTTTTTAAACCAAACTGTACTGTCTTGGGCTTtatcattgtttttgtttttttacagaaatgcttGGAGATCACGATCGACCTGTTGGTAGCAACTGTTGTAGCCTTTTATTTGCGAGGCACAAAGGTGCATCAATAGAAATAACTTGCCCCGCAATAGATTTACCGTTTctcagtatggtagggcaaaggCCTGCAAACTACTAAACCTGATAATCGTCCAAAAGTAGCACACTGATGAGAAGAATCTGTAGTAAAACCCGGACTCGAGGGTAAACTGTCTAACAAAATGAATAATTAGACATTCGAAACCACCTGTAACCATGAACAACATTTTGGAATGACCACACAAACTGTGAAATTATCATTCATGGGCTACAGGCAACCAACCATAACTTGAAGTTGAAAACCACAAATCAGAATTTATATATTCCAGTTGCTACTGGGAGGAGAATAACCATTACGCGTTGAACACACCGACAGTGtaattgcattttggtacaccagaattacattAATTCCCAATGAAACGCTGCGTTTGCGTTGCAGTGCAGTTTTGTTTATGAGAATGAATGAAATACCTGGAGTGATGAGTTTATAAAGCATGGATGAAACTTTTCTATCATCACCGAAGAACCCTTTAATAAAATGGCAGTGCTATTGCAAAGTAGGCTACAATTATGCATGTAGGCTAACATTATGTAAAATCTGAATGGCTATGCCTGCAGACTTCAGGATACATGTTTTACTGATTGCTATACAATACTGATCCATGCTTGCCGGCAATGGAGTGTCAGGAAATGTAGAAACGGAAGATCCAAGTTCAAGTGTAATTATCCATCTGGTTAGCTTTAGGCTTTTGCACTCAACATGGAAATATAATTGTTGTGATTTGAAGTTGTATTGAAGAATTTATTCATGTAACACACCGACAGTGTTATATTACGATGAGCTATAATATAATCACTAGGCCTATGCTTTGCATGCAGACTGTTAAAGAATGTGACAATGAGTAACAATGAATGTTGTCAGATCGATAAGCATTTAATTAATTACCTAAAGATTTGGATGTATCTCTGTGCACTTCCTGCAAAAGAAAGGTTGACACTAGAcattttgttttgctttttaTTATATAATTAAAACCAAAAACATATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651361 lncRNA upstream 19232 35102922 ~ 35103317 (+) True G1442579
TU1651355 lncRNA upstream 21378 35091349 ~ 35101171 (+) True G1442573
TU1651330 lncRNA upstream 69081 35053035 ~ 35053468 (+) True G1442548
TU1651329 lncRNA upstream 70056 35052146 ~ 35052493 (+) True G1442547
TU1651307 lncRNA upstream 98960 35023385 ~ 35023589 (+) True G1442525
TU1651429 lncRNA downstream 84729 35217312 ~ 35217841 (+) True G1442640
TU1651628 lncRNA downstream 105546 35238129 ~ 35238902 (+) False dzank1
TU1651634 lncRNA downstream 117468 35250051 ~ 35252235 (+) True dzank1
TU1651682 lncRNA downstream 145303 35277886 ~ 35278161 (+) True G1442852
TU1651685 lncRNA downstream 147487 35280070 ~ 35280283 (+) True G1442855
XM_021568286.2 mRNA upstream 174336 34923682 ~ 34948213 (+) False LOC110493797
XM_021568287.2 mRNA upstream 174336 34923682 ~ 34948213 (+) True LOC110493797
XM_036949782.1 mRNA upstream 219347 34844350 ~ 34903202 (+) False LOC110493796
XM_021568280.2 mRNA upstream 320227 34787290 ~ 34802322 (+) False LOC110493794
XM_021568298.2 mRNA downstream 7013 35139596 ~ 35183239 (+) False LOC110493802
XM_021568296.2 mRNA downstream 10211 35142794 ~ 35183239 (+) False LOC110493802
XM_021568297.2 mRNA downstream 10212 35142795 ~ 35183239 (+) False LOC110493802
XM_036949786.1 mRNA downstream 22366 35154949 ~ 35183239 (+) False LOC110493802
XM_021567438.2 mRNA downstream 96132 35228715 ~ 35232156 (+) False rbbp9
TU1650494 other upstream 819940 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 827220 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1146074 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1598015 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 2166492 32951800 ~ 32956057 (+) True G1440162
TU1651374 other downstream 36315 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other downstream 36315 35168898 ~ 35184540 (+) True LOC110493802
TU1652084 other downstream 541381 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 614289 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1106361 36238944 ~ 36240725 (+) False LOC118940407

Expression Profile