RNA id: XM_021568297.2


Basic Information

Item Value
RNA id XM_021568297.2
length 5957
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110493802
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35120694 ~ 35184540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTATGAACGCAGCACTATTATATTCGCAGATCGCGTCACTCGAGTTTGGGTTGGGTTGCAGTCGTTTGTTAATTCAATTGATAGCTTTCCTAGTGGGCAAATGCCCGTAAAGATACACATTCGTCTAAAAATGTTAGTCTTTAATAGATAGATTAAATATGGATTGAAAATTGGATTTAACAGTGGACTATTTCTGCCGTTCTATTATTCACGGCTGCACATTTGTACAAAACCTTTGTTGGGCCAAATGGCCATTTCGATCAGGTGGCCACCGGACTAATCCTGAGAAATTATTTCAAGGGATAGATAGATCGTTGTCATTGAGAAGGGCATTGTTACAATACCACTGCAACAGGTCTCCAGTAAAGACGACATCAATAATTGTGTAACAGGAGAATGTAAATTAGAGAGGCTCTCGTGCGTATAATACACGGGGTCGACAGAAAAAAGGAATAAACTTGATCCGATGTCACTGCTCTGTTGGGTTATCGAATACGTGAGGGATTTGATATCCTCGAATCGAAGATAGCAATAGCCAACGTTGCATGCGATACGGAGCCAATATGATGCCGATGTTCCTCACCGTGTACCTCAGCAACAACGACCAGCATTTCACAGAGGTGCCCGTTACCCCGGAAACCCTGTGTCGTGATGTGGTGGAGCTGTGCAAGGAGCCCGGGGAGGGAGAATGCTACCTAGCTGAAATGTGGCGAGGTTCAGAACGCGCCATTAGTGACGGAGAGCGAATGCTGGACGTGCTCCAGCATTGGGGACAGCAGAGGGGGGAGGTTCGCTTCCTCCTGCGCCACGAACGGGCACCCTGCAGAGAGTCGGGTGGATCAAGGGTTTCCGATCACTCGGCCAAAAGGAACATGGTCATGGTCCCTGTGGACCGATGCATGGAAAATGGGgtggcaCCGCCTCGCATGGACATCACCCTCTCGGAGCTGCAGGAGATGGCATCACGGCAACAGCAGCAGATCAATTCGCAGCAGCAGCTCCTGGCCTCAAAGGAGCAGCGTCTGCGCTACCTGAGGCTGCAAGAGCAGCGGCAGCAGCAGGCGTCAGAGCAGGAGAGACTACGTCAGCTCCGTGAGAACGCTGAGAACCAGGAGACCAAGCTGCGGCGGGTGCGGGCCCTCAAGGGTCAAGTGGAGCAGAAACGCCAAAGCAACAGCAAACTGGTGGAGGAGATAGAGCAGATGAACGGGCTGTTTCAGAGTAAGCAGCGCGAGCTCCTGGTGGCCGTCTCCAGAGTGGAGGAGCTGAGCAGGCAGCTGGAGACCGTGAAAAGCGTCAAGATGGAGTCTTCTCAGGACGGCCCGAGCTCCGCCGGCGAGCTGGAGCGTCTTTACAAGGAGCTGCAGCTGAGGAATAAACTGAACCAGGACCAGAGTGCCAAGCTGCAACAGCAGCGTGAGAGCCTGAGCAAGCGCAACCTGGAGGTGGCCACCATGGACAAGCGAGTGGCCGAACTCCGTGAACGCCTGTGGAAGAAGAAGGCAGCGCTACAGCAGAAGGAGAACCTGCCCGTCCCCAGAAAGAGCCAGGCCCTGCAGCCGTGTGGCCCCTCCAGGGTGGCGGCCGTGGGCCCTTACATCCTGTCCTCCACCGCGGCCCCAGGGCCTCCGGTGCCCAGCCGACAGGAGCTCCTGATCAAGCCTGCCTACCCTGACGGCACCACCACCTTACCAATGCCAGACTCCTCCATGAAGGCCCCTCCTAGACCACTTAAACCCTACTCCGGTTTCCAGTCATCCAAGATGTCCAAGCTGTCCGACTGGTCCAGCTCCAGTGCGGAGTCCAGCGGCAGTCACCATGGCATGTCCTCTACTCTGCCTCGCATGTCCAGCCTCTCCTCACAGGGCTCAGGAGATGCCGAGACCCTCAAGGACCAAAAGGGGCGTCACATTTCTATGTTTGACGCcccgcctcccctcccctcacggAACAATCAGAGCAGCGAGGACCTCTTGAGGGATGCCCAGGCTGGTGGTAAGGCTCTGGGCAAGGTGCCACCTCCTATCCCTACCAAGCCCCCGACCTTCGGTAAACCGCCCTACAGCACAGGCACCTTCCCGGGCAAGGCAAAACCGTCCGCCTCCCTCCATCTGTGTGCACCTcctcccatccccatccacaGCCACACCCTGCCTCTGCCCCCCAAGCAGGAGGCTCCTCCGGCGGCCACGGTGCGCCCCTTCACCCCCGATCCTCCAGAATCCACAGTGGCCGTGCCTGTCCTCCAGAAGCCACAGACGGTGGCGGCCTCGTCCATCTACTCCATGTACACCCAACAGCCCCGGACAGGCGGGGGCACTCTGACACGCACTCAGCCCAGAGTGTATGGAAAGCCAGTTATCCCAGGCAGTGGGGGGCAGCAGTCGCTCCTTCAGGACTCCGTCTATTCGGGGGCCGGCGATTTCGAAGTGGACCAGGGGGGTCCCGGTCTGGCGCCTCCGGCCCCTGAGAGCCAGGGGGGCCAGGAGACAGAGCGGGCCCCTCGTCCCCTCAGCCCCACCaagctcctccccttcatctcgcACCCCCACCGGCACCCTAGTGACGCCGACCTGGAGGCCCTGCGCCGCCGGCTGCACCATGCCCCGCGGCCCCTCAAGAAGCGCAGCTCCATTACAGAGCCTGAGGGCCCCGCGGGGCCCAACATTCAGAAGCTGCTCTACCAGAAGACCACACTGGCAGCCATGGAGACTGTTGTGGCGTCTCCCTATGAGGGTGAAGGTGGAGGAACATGGAAGGAGGGCGCCAGTGCCGTTGGAGCCCGAGACCGCACGGTTATGTCCCAAGTTTTTGCCGCCGCAGCGTCCCTCGCCGAGACAGAGAAAGACGCACAAGTGCCTCCACCTCAGCCGCCCCGCTCGCCCATCCCAGagccctcttcctcctccagccACACACTGCCCCAGTCGCTGGAGGAGGAAGAGCCAGAGCCCTGCCCCCCGCCCCCCCATCAGACAGAAGCCTACCTGGAGGAGTACCCACCCTACCCGCCCCCTCCATACCCCAGCGTGGGGGAGCAGGACCTGGGGGAGGACACCCTCAGCATGCAGGCTCCGGAGGTCACGGGACAAGTCACTCTGCCACCGgGCAAGAGGACCAACCTGCGGAAGGTCGACTCGGAGCGCATCGACCACGGCATGCGGGTGAAGTTCAACCCCCTGGCCCTGCTGCTGGACTCATCACTGGAGGGCGAGTATGATCTGGTGCAGAGGGTCATCTATGACGTGGATGACCCCAGCCTGCCCAATGACGAGGGCATCACAGCCCTGCACAATGCCGTCTGTGCCGGCCACACCGAGATCGTCAAGTTCCTGGTGCAGTTTGGCGTGAACGCCAACGCCGCCGACAGCGATGGCTGGACTCCGCTGCACTGCGCGGCCTCCTGTAACAACGTGCAGGTGTGTAAGTTCCTGGTGGAGTCCGGGGCTGCTGTGTTCGCCACCACCTACAGTGACATGCAGACAGCGGCAGACAAGTgcgaggagatggaggagggctaCGCACAGTGCTCCCAGTTCCTCTACGGTGTACAGGAGAAGATAGGCATCATGAACCGTGGGGTGGTGTACGCCCTGTGGGACTACGAGGCCGAGCACGACGACGAGCTGGCCTTCCAGGAAGGCGACTGCATGACTGTGCTGCGGCGCGAGGACAAGGACGAGATCGAGTGGTGGTGGGCCCGTTGCGGAGACCGAGAGGGCTACATTCCAAGGAACCTGCTAGGGCTGTATCTGAGGATCAAGCCACGGCAGAGGAGCTTGGCTTAAATCATATCGGCTCACGTTCCACCCTGCTCGCTGACAACAACTCCGACTTGAAGAAGTTGAAGAACAAGAAGTTACTTTAGAAAGGCGAATGAAGAACTTTAATAGTCCAGCACTACATTTCACGCTTCTGGTCATTTTGGATGTCAAAGTCAAGCATTACACTTCAATCGTTTGGTCTTTTGGACCTGTCTGTGAAGGACCATATCATGCTAAATGGTTTTTCAACCTATGTATGGATAATATACACATGGTCATGCTGTTTCCTTTTCACTGCAGGAATGTATACACCGTGCAACATTTGTAATGGAGACTTCTGGACAGTTTTTTTTTGTAGACGTGTGATTTTCTGAGCAGAATCAATTTGTAAGGGTTTGTAACTGTGGCAGTTGGAAATGTAAAGCTTTTTCTACGTCATGGCATTTTCCATTATCTTACTATCAGGTTATCACAAACAATCTTGCTgtgggtatacagtgccttcagaaagtattcataccccttgacttattccacattgtgttacagcttgaattcaaaatggattacatttgtttatttctcaccccatctacacacaataccccatagtgagaaaaaaatgttttgtattgaaaatgaaatacagaaatgtcaaatgaacataagcattcacaccactgagtcaatacatgaaagaatcacctttggcagcgattacagctgagtttttctgggtaagtctctctaagagctttgcacacctgggttgtacaatatttgcacattattatttaaaaaattccTCAAGCACTGTCACTCGCGTTGGTTGATCATTTGTAGATCGCCATTATCAATTCTTGCCACATATTTTGAATCCGAtgtatgtcaaaactgtaactaggccactcaggaacatttgaTGTCTTCGTAACCAACTCCATTGTATATTTTAGGTTTTTGTCATGTTAAAAGTTGAATTTGTCTCCCAacgtctgttggaaagcagactgagcttttcctctaggattttgcctgcgcttagctctattctgtttatttttatcccaaaaaactccctagtctttgccgatgacaagcatacctataacatgatgcagcccccaccatgcttgaaaatatgaagtggcaTTCAGTGATATGTTGGATTTTTGCCAAACCTAACGATTTGTATTCAGTacataaagttcatttctttgccacaaaATAAAAtctacttatttaggcttgcccaaacaaaggggttgaatacttattgactcaaaagctgaaaagcttttcatttgtatttaatttgtaattaaaataataatatccACTTTgacgtgtgtgtatgcgtgcgacACAGAatctgtttaatccattttaaatggttataacacaatgtggaaaaagtcaaggggtgtgatcACTTTCTAAAGGCACCCTAGTTCCACCTGGATTTGAAGCTCTCTAATGTTGTGGTGGAGTTACTTTGTTTTCCTATGAATGTCTATTTTTCAATATTTTTGTCAAACATTTTGTGTGTAAGTACTGTATGTAGCCTGGCATGCTGTGCTAGTAATGAATGTTGAAAAGCACAAGCTTCAAGGGCCTTTGCTCAACATCACCTCCTTATCCAATCCTTCATATCTTAAAGGGCTGCTCAATGTTATTCCCGGAGAGGTACCGTCCTGTATGTTTTCGATCCAACCATAATCTAGCCCATCCTATTTATAACAATTAggtggttgataaactgaatctgGTTAGTTACAACTGCGGTTGGAGCGAAAACATACACGAggctagctctccaggaacagggttgggccTCCCTGCATGTGGACCAGACAGAATATGACCAgcattttttttttggttacacGTTATAACTTTCATGATTAAGCCATTATAATCCTTTATAAATGCCTAATAATTAATGTAAATAGTCATTAATAGTATGTAGACCCTTTAACTATTTATACATCTTTAGCCTATTCATGAAAGTCATTTATAAAAGTGTAAACACATTTTATTAACGGAATTGAGTAATTTAAACCAGTGACATTTCAAAACGTTGCTTTTAGCTAAGCTGCAAAATTCACATTAAATGTGTTCTGTGAACAACCTGTGTTGACCATCAAGCCAAATAAGTTCAGCttttaaagtcaataaaaatatgcaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651361 lncRNA upstream 39478 35102922 ~ 35103317 (+) True G1442579
TU1651355 lncRNA upstream 41624 35091349 ~ 35101171 (+) True G1442573
TU1651330 lncRNA upstream 89327 35053035 ~ 35053468 (+) True G1442548
TU1651329 lncRNA upstream 90302 35052146 ~ 35052493 (+) True G1442547
TU1651307 lncRNA upstream 119206 35023385 ~ 35023589 (+) True G1442525
TU1651429 lncRNA downstream 34073 35217312 ~ 35217841 (+) True G1442640
TU1651628 lncRNA downstream 54890 35238129 ~ 35238902 (+) False dzank1
TU1651634 lncRNA downstream 66812 35250051 ~ 35252235 (+) True dzank1
TU1651682 lncRNA downstream 94647 35277886 ~ 35278161 (+) True G1442852
TU1651685 lncRNA downstream 96831 35280070 ~ 35280283 (+) True G1442855
XM_021568293.2 mRNA upstream 10212 35122549 ~ 35132583 (+) False LOC110493801
XM_021568295.2 mRNA upstream 10212 35122549 ~ 35132583 (+) True LOC110493801
XM_021568286.2 mRNA upstream 194582 34923682 ~ 34948213 (+) False LOC110493797
XM_021568287.2 mRNA upstream 194582 34923682 ~ 34948213 (+) True LOC110493797
XM_036949782.1 mRNA upstream 239593 34844350 ~ 34903202 (+) False LOC110493796
XM_021567438.2 mRNA downstream 45476 35228715 ~ 35232156 (+) False rbbp9
NM_001165246.1 mRNA downstream 45564 35228803 ~ 35232145 (+) True rbbp9
XM_021568303.2 mRNA downstream 55657 35238896 ~ 35252453 (+) False dzank1
XM_021568304.2 mRNA downstream 55657 35238896 ~ 35252453 (+) False dzank1
XM_021568305.2 mRNA downstream 55657 35238896 ~ 35252453 (+) False dzank1
TU1650494 other upstream 840186 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 847466 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1166320 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1618261 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 2186738 32951800 ~ 32956057 (+) True G1440162
TU1652084 other downstream 490725 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 563633 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1055705 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 1147996 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 1309138 36492377 ~ 36529730 (+) False LOC110493174

Expression Profile