RNA id: TU1651377


Basic Information

Item Value
RNA id TU1651377
length 4629
RNA type TUCP
GC content 0.42
exon number 6
gene id LOC110493802
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35120694 ~ 35184540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCACGGGACAAGTCACTCTGCCACCGgGCAAGAGGACCAACCTGCGGAAGGTCGACTCGGAGCGCATCGACCACGGCATGCGGGTGAAGTTCAACCCCCTGGCCCTGCTGCTGGACTCATCACTGGAGGGCGAGTATGATCTGGTGCAGAGGGTCATCTATGACGTGAGTAGTCCCACTCCTTTTAATTGAAGAGATAGTGTTGAGAAGATAAGTAGGGTGGGGAGTCAAAGAGTTGTTGGCCAGATTCGAACTCAGTGACGTGAGTTTTACATCATTAGCCCTCCTAATTTCAATGTCAATACCTCAGACGACTCTTCCAAGCAGACGTCCCATAAGCGAAGGCTTTGCAATACCGCTGCAAGTAGTACTCTTAAGCAACTACAGACGCTAGTCTACGTCCATCAAAATGCTTAGCTTAGAAGTTGCCCTTAAGCACAGTTATAGGACCTGCTAAAACCTACCCAAATCCTAACctcAACAATGTTGCACTTAGGCACATATTTAAGATCAGCTAATCCCTCCCCAAATCCTAACATCAACCGTAAGGGGTAAAGACGGATAACTGACCTTGTCTCGGAAATGTCTTGAAACATATTAACTTTGTGCCTTATAGGTGGATGACCCCAGCCTGCCCAATGACGAGGGCATCACAGCCCTGCACAATGCCGTCTGTGCCGGCCACACCGAGATCGTCAAGTTCCTGGTGCAGTTTGGCGTGAACGCCAACGCCGCCGACAGCGATGGCTGGACTCCGCTGCACTGCGCGGCCTCCTGTAACAACGTGCAGGTGTGTAAGTTCCTGGTGGAGTCCGGGGCTGCTGTGTTCGCCACCACCTACAGTGACATGCAGACAGCGGCAGACAAGTgcgaggagatggaggagggctaCGCACAGTGCTCCCAGTTCCTCTACGGTGTACAGGAGAAGATAGGCATCATGAACCGTGGGGTGGTGTACGCCCTGTGGGACTACGAGGCCGAGCACGACGACGAGCTGGCCTTCCAGGAAGGCGACTGCATGACTGTGCTGCGGCGCGAGGACAAGGACGAGATCGAGTGGTGGTGGGCCCGTTGCGGAGACCGAGAGGGCTACATTCCAAGGAACCTGCTAGGGCTGTATCTGAGGATCAAGCCACGGCAGAGGAGCTTGGCTTAAATCATATCGGCTCACGTTCCACCCTGCTCGCTGACAACAACTCCGACTTGAAGAAGTTGAAGAACAAGAAGTTACTTTAGAAAGGCGAATGAAGAACTTTAATAGTCCAGCACTACATTTCACGCTTCTGGTCATTTTGGATGTCAAAGTCAAGCATTACACTTCAATCGTTTGGTCTTTTGGACCTGTCTGTGAAGGACCATATCATGCTAAATGGTTTTTCAACCTATGTATGGATAATATACACATGGTCATGCTGTTTCCTTTTCACTGCAGGAATGTATACACCGTGCAACATTTGTAATGGAGACTTCTGGACAGTTTTTTTTTGTAGACGTGTGATTTTCTGAGCAGAATCAATTTGTAAGGGTTTGTAACTGTGGCAGTTGGAAATGTAAAGCTTTTTCTACGTCATGGCATTTTCCATTATCTTACTATCAGGTTATCACAAACAATCTTGCTgtgggtatacagtgccttcagaaagtattcataccccttgacttattccacattgtgttacagcttgaattcaaaatggattacatttgtttatttctcaccccatctacacacaataccccatagtgagaaaaaaatgttttgtattgaaaatgaaatacagaaatgtcaaatgaacataagcattcacaccactgagtcaatacatgaaagaatcacctttggcagcgattacagctgagtttttctgggtaagtctctctaagagctttgcacacctgggttgtacaatatttgcacattattatttaaaaaattccTCAAGCACTGTCACTCGCGTTGGTTGATCATTTGTAGATCGCCATTATCAATTCTTGCCACATATTTTGAATCCGAtgtatgtcaaaactgtaactaggccactcaggaacatttgaTGTCTTCGTAACCAACTCCATTGTATATTTTAGGTTTTTGTCATGTTAAAAGTTGAATTTGTCTCCCAacgtctgttggaaagcagactgagcttttcctctaggattttgcctgcgcttagctctattctgtttatttttatcccaaaaaactccctagtctttgccgatgacaagcatacctataacatgatgcagcccccaccatgcttgaaaatatgaagtggcaTTCAGTGATATGTTGGATTTTTGCCAAACCTAACGATTTGTATTCAGTacataaagttcatttctttgccacaaaATAAAAtctacttatttaggcttgcccaaacaaaggggttgaatacttattgactcaaaagctgaaaagcttttcatttgtatttaatttgtaattaaaataataatatccACTTTgacgtgtgtgtatgcgtgcgacACAGAatctgtttaatccattttaaatggttataacacaatgtggaaaaagtcaaggggtgtgatcACTTTCTAAAGGCACCCTAGTTCCACCTGGATTTGAAGCTCTCTAATGTTGTGGTGGAGTTACTTTGTTTTCCTATGAATGTCTATTTTTCAATATTTTTGTCAAACATTTTGTGTGTAAGTACTGTATGTAGCCTGGCATGCTGTGCTAGTAATGAATGTTGAAAAGCACAAGCTTCAAGGGCCTTTGCTCAACATCACCTCCTTATCCAATCCTTCATATCTTAAAGGGCTGCTCAATGTTATTCCCGGAGAGGTACCGTCCTGTATGTTTTCGATCCAACCATAATCTAGCCCATCCTATTTATAACAATTAggtggttgataaactgaatctgGTTAGTTACAACTGCGGTTGGAGCGAAAACATACACGAggctagctctccaggaacagggttgggccTCCCTGCATGTGGACCAGACAGAATATGACCAgcattttttttttggttacacGTTATAACTTTCATGATTAAGCCATTATAATCCTTTATAAATGCCTAATAATTAATGTAAATAGTCATTAATAGTATGTAGACCCTTTAACTATTTATACATCTTTAGCCTATTCATGAAAGTCATTTATAAAAGTGTAAACACATTTTATTAACGGAATTGAGTAATTTAAACCAGTGACATTTCAAAACGTTGCTTTTAGCTAAGCTGCAAAATTCACATTAAATGTGTTCTGTGAACAACCTGTGTTGACCATCAAGCCAAATAAGTTCAGCttttaaagtcaataaaaatatgcaaaaatatgTCTTTTGATGTTTTTTATGGGGAAAGAAAGTGTCACGATAAAACATGTTTAATAGTATTTACGCAACCTTGATGCAATGCATACACATACTTGCCACGTGTCTCAACCAAAGAAGCTAATAATACCTGTAATATCATATTTATTATATCATCTAAAAGAAAAGCGCTCTGCATGCTTTCTGTATATTTCTTATGACCGCAAACATGTAAAGATCAGCTGATACTTGAATAAGCAGCATACATCCGTTGTCACCGAGACCTCAATATGCATCAACACCATGACAAATTGAATCCCGTGTTTCACTACTGCACACCTTAAAGCTCTACGGGACTTACGTCCGGTAACCTCTGGCGGACTCAAACATGCAGAAGCTATTCCAAAACTACAAAGTGCAAAATAGACAACTCTCACAAAAATGTTTGTGCTTCAAAATGGTATTTAGAAGTGTATGTAACACTACATTCAATGCATTAGTTATAATTGCACACAACCTCGTAAAGGGTGAGGGATAAAGTCTAGAGTTCAATAAATATTTGTCATTTAGGAGTCCATTTAGTCTGATTATTAGATTTTCACAAGTCCCTATTAAGCATGCAGACTCCACATGGGTATCTAGCTGCACAAAGCTGCCTTGTACACAGACAAGCCTGAAGCTATGACATAGACAGCATTGGGTTCAATGGGTTGACATAACAGGGTAACAAAAGCGGCGTCTCTACTATGGAAAACATCGCATCACTTGATACTTGCCCCTACATTTCTTTCAGAATGGGTTTGCAATGCAACATTCACTTGACTACGCCAAGCATCTCGACTCTGCTCATTCTCAACCCTCACGTTATTGCTGCCCTACACAGACTTAGTTGAATTTAACACTTAGAAAATTAGCATGGCAGCATTTACGGTCGCCACTTATTTGCGTCGCCAAAATGGGCAGCACGTAGTCTACTTTTCCTTAATACTAATCAAGGCGAATGAAGTGCAGAGAGTAAACCACAATATTTTAGAAAAAGTATGGAAGGAAACTTGCATTCAAAAGCATGGTAGAAGAGCTCTTCCTTTTGCAGACAGGACCACCACTGGTCGACTTCCCTGCTTTCCACATGCTTTTGAAAGCAATGCTAACTGATACAACCTATTTACACTAGCATCGCTACATGCTCCAAAAATGCTAGCCATTCTGCACATTGCTAAATAACAAACTTAAAAACGACAACACCTTaggtcagggtttcccaaactcccCCCACGGGTATACGCTTTGTTTTTTGCTCTAacaccacacagctgattcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651361 lncRNA upstream 65581 35102922 ~ 35103317 (+) True G1442579
TU1651355 lncRNA upstream 67727 35091349 ~ 35101171 (+) True G1442573
TU1651330 lncRNA upstream 115430 35053035 ~ 35053468 (+) True G1442548
TU1651329 lncRNA upstream 116405 35052146 ~ 35052493 (+) True G1442547
TU1651307 lncRNA upstream 145309 35023385 ~ 35023589 (+) True G1442525
TU1651429 lncRNA downstream 32772 35217312 ~ 35217841 (+) True G1442640
TU1651628 lncRNA downstream 53589 35238129 ~ 35238902 (+) False dzank1
TU1651634 lncRNA downstream 65511 35250051 ~ 35252235 (+) True dzank1
TU1651682 lncRNA downstream 93346 35277886 ~ 35278161 (+) True G1442852
TU1651685 lncRNA downstream 95530 35280070 ~ 35280283 (+) True G1442855
XM_021568293.2 mRNA upstream 36315 35122549 ~ 35132583 (+) False LOC110493801
XM_021568295.2 mRNA upstream 36315 35122549 ~ 35132583 (+) True LOC110493801
XM_021568286.2 mRNA upstream 220685 34923682 ~ 34948213 (+) False LOC110493797
XM_021568287.2 mRNA upstream 220685 34923682 ~ 34948213 (+) True LOC110493797
XM_036949782.1 mRNA upstream 265696 34844350 ~ 34903202 (+) False LOC110493796
XM_021567438.2 mRNA downstream 44175 35228715 ~ 35232156 (+) False rbbp9
NM_001165246.1 mRNA downstream 44263 35228803 ~ 35232145 (+) True rbbp9
XM_021568303.2 mRNA downstream 54356 35238896 ~ 35252453 (+) False dzank1
XM_021568304.2 mRNA downstream 54356 35238896 ~ 35252453 (+) False dzank1
XM_021568305.2 mRNA downstream 54356 35238896 ~ 35252453 (+) False dzank1
TU1650494 other upstream 866289 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 873569 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1192423 33976193 ~ 33976475 (+) True G1441315
TU1649436 other upstream 1644364 33524199 ~ 33524534 (+) True G1440890
TU1648662 other upstream 2212841 32951800 ~ 32956057 (+) True G1440162
TU1652084 other downstream 489424 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 562332 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 1054404 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 1146695 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 1307837 36492377 ~ 36529730 (+) False LOC110493174

Expression Profile