RNA id: TCONS_00046220


Basic Information

Item Value
RNA id TCONS_00046220
length 3997
RNA type mRNA
GC content 0.36
exon number 6
gene id XLOC_023375
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17040211 ~ 17067284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAGTATGTGACGCGATGGGCGGTCAGGTTGAGCAACAGAAGCTTCATGACTTTCTTTGGGAGCTCCACATTAGCGAGCTGAAGTTTGAAGCCTGTTCCAACATCGTTCTCATTGGAAAGATTAAAAAGGGCACATATTTTCACAGAGCATTACTTTTTAAGGTTCTTGCTGACCGAATTGGGCTGAGCTGTAGTCTCATCAGAGGAGAATACAACCGTGCCTGGAATGAAATTCTCATCATGGGTCCGAAGAAAGCTTATGGTTATTCTCAGCCTGAAAGCTATATCATAGACCTCATGCATCAACCTGGAAACCTCATGAAAAGCAACTCACAAGCAGCCCTAATATATCAGTCCATTTAAAGCAGATATTAattttgtttctgtgtgtctATAGGGAAACTGAGAGGGGTGGGATAAATTCAATAATTTGACAATATATAAATTATACTCTGTAAAACAAAAATTGAATTAAATCCAAATAAAGTATTACCTTGATATAAAACTACGTGAGATATAAAATGCTGTGAATTGTGGTCAAGTCAGAGTTGTGATTTATGAAGTTCAAAGTCTACATTGATGAGCCAGAAAACAAGAAACCCCAAAGTCACATAAGTAAAAACTTCGACGTTCGTGAGCGGTTAGTCCATTGACAAAAGGTGCAAAGTTTGATCAGTTTCAGTCGCCAGTCGACCGTGACCCATAAAGCTGTGAGTTGTGACCGGTTTCCGCTGCTCGAGCTGTGAGGGGTGGAATGAAGACAACTGAGCTCAATTCTTTCCAGTCTATTGGGTTGCCCATCTTAACTAATAGTGGAGAAAGTCCCGCCAGTGCATGAAATAGTATGTCGAGAAGCATGTCACGGTTTCTAGTTCGCCTCTCCACTGTCGTTTCCAAAGGAGCGACTGGCAAATCAGTTTTACCTCAGAAGAGGATATTCGCTGGGATTCGATTGATTTCTTCATCTACGGGTTTGCAGTCATTGACACGTTATGACCAGTCCACAGACTGGCAGAGAAAACTATCCCCAGAACAATATGTTGTTACAAGAGAAAAAGGCACAGAGGTGCCGTTCAGTGGCATCTACTTGAATCACAATGAGGTGGGcatgtatcactgtgtttgctgTGACTCGCCTCTTTTTAGCTCAGAAGCAAAATATGACGCAGGAGCTGGCTGGCCGTCATTCTGTGAGGCTCATGGGACTTGGGAAAAAGATGAGAGTCATGCCAACATTGTGCGCCGCCCTGATAACTCACTTGGCAGCACAGGAACTGAGGTCATCTGCAAACATtGTGATGCCCACCTTGGACATGTCTTTGAGGATGGTCCTGATCCGACCGGACAGCGATTCTGCATCAACAGTGTAGCACTGAACTTTAAACCCAGAGAAAAGTAATGCCAACAAATCCAATAGtgcaaataacaaaaacaaatagcaTTGGAATAACAAATGTCCTTAGTTCTGTGCTATGAGTCGTGCCGGTTCACTCCTAAAATGATAACTATAACAATAACTATATTAGCATCCACAACAACAAACATTTGAGTTTATATTGACTGCCCACTTTTTCTGCAACATTGGTTTCCATATTGATTTTTCCCATTGATTTTTCCAATAGGAATTAAGCACACGACACTGTTAAATGTATTTGACTTTTATCATAATACATGATATAATGATATTATCACTGCTGCAAAGAAAGGTTCTTTTAGCATGTACAATTACAAACAGAGCTCTTCATTTTCGGGCATGGCTTAAAGCAGTGTGTCCCAAAGTGAGGGTCGCAAGACAATTTGCTTAACGATTTCCAAAATGGTTGAATGTTAATtatgtaaaatgttaataataaacattaaaaaataacatgcaaaaaaaagtcatcagcctttcgattattattttttttttttgcaacccctggggttATTACGTTATATTAAAGACGTAGCAATTGggttcaacacaggctcattctgattacgaaCCCCTATAAACatatctggagagcaccaaatatgtcccaggagccaCTGCCACTGTGTAAGTGTTTTCagttctcaaatttctcttgcgagtgccattttgcgcctgctcttctcatgtaaatccaccagaggtcgctgttgactggctgaccgaccaaccaaccgaccaatccCCCATCCTCCCCATCTCTAAACTTAACCAATAGTATTGTTAAGAGCTCCTATTGTGACCCGCCCTAAcgacttccctaaacccaactgacaatttTTTGAAagttcagaaaaagaaaacttaaagacctgtaatggatgtgacaaaggagacatgcaaaacatgcagtgttaacatatgaaattatttgtattttaaaataaataacctaataagtCTTGAACTCTACTGTTAATACAAAACTTTGAATGTTCTGAAAAGCCATACAAAtggtttatataataaaataactattcactgtattttaaagtgtgtatgattagggctgcacgatgctggaaaaatctaacattgtgtttttttttcccagcgATACATGTATATATTACGAAATTAATACAATTTTGGTAGATTTCTTTAAATAGCTCTAATTGGAAtggatttatataaataaaaataataattaataaaaacaaaattgagcaaagataaaaataaatttagcagtcagatattcaggtacagtaatatgGTACGATACAATATCAATATATTTTGCCCCCGATTATGATTATTACGAATATTAACCATCCACAATATATCATCATATTCATAAATGAAGGGGTGGATGCATCAAAAATGTAGAAGATGTATTTCATTAACAGCACATATATTTTGTAGAATTGCAACATTGATATGTTTGATCTGACACTATGAGAAGCACCACCTCATGTACAGTCATCTAAGTGGTAAATGGTAGCAGTGCAAGGCTAATGAAATAGTTCAGATCTTTTGTACCTTTACATAAATCCTGATACTTGGCTACATCATTAGTGTACCGGGAGTGGAATAAATCTCAATAAACCAGCATAGATATTTTGTCCTACCCCtaatattgaataatcaaatgtaatgtaaataaacactgtgcattcttcattgctgatcaactataataatCCCAACTTCACATTGAAAATGCTGCGGTGTGATTATGGCGAATgagcacattgcgatatcgatgctgaaacatcATATTGAGCAGCCCTATTCATGAAAACATGTTATGCATGGTCATTATCATGATTTATTGTAGCATTTAATATTGGCACGTCTAATAGGGATCTGCTTATCTGCTTAAgtctttgttgttattattattattaacattttaaccaAACTATCCAGCTATGAGGAGAATCACAGCATTTAAACTTTGAGAAAAAtcagaaaataagaaaataaagaaatatttacaCAAAATTGTTTAACAGCTTATCTGAGAAAAGTAACTACAGTCCCACAACGCATTGATGACATGAATGAcaatttaatgaaaagaaaatgaaataaacattgattAAAAATCACAGTGTGCTGCAGTTTTGTCATTTGATTTTTACATGCTTGAACTCTTTGAAGCAGGGTGGATTCTGATGGTCAATGTGCCTTCATGATCTGGAAAAATCTCAGAAAGTGATTTCAATTATTTCAAGTTGATGTGTCCACAGTACATTGTTGTTATAGTTATCATCTTTGGTTTGAGCGTGCATTTAGTTTACAATATTTACTCTTATCaaatacagacacaaacacacacacacacacacacacgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatatttgcaGGCTGTGTTTGTGAAATGGTTCAATTAAACATCCATCTTGTACCACTTCAAAAAGGTGTAAATATTTAttgcataatatattttatgtttgagTGGCACTgcataagaataaataa

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0030091 protein repair biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0033745 L-methionine-(R)-S-oxide reductase activity molecular_function
GO:0003779 actin binding molecular_function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2304 Predicted to enable actin binding activity and peptide-methionine (R)-S-oxide reductase activity. Predicted to be involved in actin filament polymerization. Predicted to act upstream of or within protein repair and response to oxidative stress. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human MSRB2 (methionine sulfoxide reductase B2).

Ensembl:

ensembl_id ENSDART00000175508

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046850 lncRNA downstream 817425 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047169 lncRNA downstream 892693 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046849 lncRNA downstream 1290797 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047168 lncRNA downstream 2007857 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 2595075 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047170 lncRNA upstream 75140 17124410 ~ 17126986 (-) True XLOC_023376
TCONS_00047171 lncRNA upstream 184256 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046227 lncRNA upstream 317039 17366309 ~ 17368570 (-) True XLOC_023379
TCONS_00047172 lncRNA upstream 354200 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046228 lncRNA upstream 354200 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00046219 mRNA downstream 573 17031129 ~ 17039638 (-) True XLOC_023374
TCONS_00046218 mRNA downstream 10837 17027310 ~ 17029374 (-) True XLOC_023373
TCONS_00046217 mRNA downstream 16819 17021513 ~ 17023392 (-) True XLOC_023372
TCONS_00046214 mRNA downstream 59874 16962969 ~ 16980337 (-) False XLOC_023371
TCONS_00046215 mRNA downstream 60483 16965205 ~ 16979728 (-) False XLOC_023371
TCONS_00046224 mRNA upstream 315475 17364745 ~ 17400143 (-) False XLOC_023379
TCONS_00046225 mRNA upstream 315832 17365102 ~ 17389263 (-) False XLOC_023379
TCONS_00046226 mRNA upstream 315832 17365102 ~ 17400472 (-) False XLOC_023379
TCONS_00046232 mRNA upstream 367880 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046231 mRNA upstream 367880 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046216 other downstream 60483 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 140087 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 485228 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 965096 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046200 other downstream 1826226 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046223 other upstream 87479 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046236 other upstream 497483 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046242 other upstream 1403902 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 1420896 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 1424511 18473781 ~ 18485411 (-) True XLOC_023387

Expression Profile

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