RNA id: XM_021568304.2


Basic Information

Item Value
RNA id XM_021568304.2
length 3543
RNA type mRNA
GC content 0.49
exon number 21
gene id dzank1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35238129 ~ 35252453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAATACTTTTCACTGTAGTTAAATTAATTTATAATTAGATTTCTTTCCTCAGCCTATTGTCATCGGTATTTTTGTATTTGGTgagtgatagcaaagcagtcggTGCATTTTGTAACAATAACAAAGATGCTTAGAGAATGGTTGACTTGAATATAATGAAAGAGCCAGCAAGACATGCATAGAACGCAGTGAATTACATTTCTATGGCGCGAGCATTCAAAGTTCAAAGTATTTCAGGAATTGCAAAATGATAACTAATATAATGAAAGTTGAGAATAAACCATGAAAACATTGTGAATCCTGCCATTGGCTGTGGTGGTTGCTAAGGAGTATGTTTCTCCGTTGCTGCGTCGAATAGGCAATGAAACATCAGCGGTCACTGATCATCGCATCTATATCAGGACCGAATATGGCAGCCGGTTGCATTGTGGTGCCTCTCATCATACCGATTCGAATCCCCCCTCCTGGAAAAGCCAAGCATGAGATAGACACCACAACTCCTGTGGAGCTCAAATCAGATACCCAAGATGTCACTATCTACTACACTCTGGATGGTACTAAACCAGAGGTGACGAAGAGACCAGGGTTTGGAGAGAACAACACTTTGAAGTATAGCGGACCAATACGCTTACCTGAGGGCAAAGTGTCAGTCAAAGCTCTGGCTATCACCAGGGATGGTCGAGAGAGTGCCATTGTCACCAAGCTATTTCTGGTGGAGTATGTGCCCTCAAACGAGCCACCTTCCATTGAGGACAAGGATGATAACTTTCTGAAGGAGTATGAACGAGACCTCTCTAGACAGGAGATGGGGACAGCGAACGGTTCTGGAGATGCCTCACTGAAGCTTCAAGGTCCACGGTTCCTCAGCAGCCGTCTAGGGCCTGTGTCCCCTGCTCTGGAGCCCATGTCTTCACATCATTCTCAAACACTGAATGCAAGCTTGGAAGACAGTCCTTTCAAAAACCTAACCAGCACTCAAATGTCAAGGATCCAAAGGGAGACAGACTTTCTGAGGTGTGCGAAGTGCTTGAGCCATCGCCCCTCAGACCCCTTTGCCCGCTTTTGTCTGCAGTGCGGCACCGCTGTGCTGCCTGTGCCAGGCCAGAGGCTGCCACCCACAGAGGGTGGACAGATGGGCTTGTGTGTCCACTGTAAAACAATGGTGCCTGTCAACACCCCCACATGTGTGGTATGTGAGGCCCCCATGAGCCCCCAGCTCCAGCCTCAGGCCAGCTTAAGACTCCAGAACAAGGTGATCTGTCCGTCATGTGGAACCGGAAACCCTCCGCATATCTCAACTTGTGTCACCTGTGAAACTAAACTACTGCAGCCACCCACTGCTGTTTTGGGTGGTCAGAGTGCCCCGCCACTTCCATCTGGAGCAGGCAAGATGATGTCCTGTTCTAAGTGCAGCCGGGTCAACCACTCGGATGCGCGCTTCTGTGACTGGTGCGGTTCCAAGCCTGGCCATTCAGTCAGCTGTTTGATCTGCTCCCGGTGCGGAGCGAGCAGCCACCCCTATGCCAAATTCTGTGGCTCCTGTGGGGTGTTTCTGGAGGGGCCACCTAGGGGGGAGTCACGTGCCAGCCTTGCCTATTCCATGGGGGGGAAACTGGAGTTGGAGCGAATGTCCACTCACACCTCTGACGGTGCCACTGCCACCTGGCAGGCTGTGCCCTCCTCCGTTTCCCCCGGTGTGGCGTTGGCCCCGGCTCCAGCACGGGCGGACCAGCAGACTCAGACGGTGGGCTTGTTCTACCCGTCGGGCACTGAAGTCCACAGGAAGGGCCAGCAGGTGGCGCTGGAGCTGAGGAGACAGGAGCAGATGAGGGACCGCAGACCACTGCTCACAGCTATAAGCCCAGGCAGAGGGTACTGGAGGAAGCAGCTGGACCATGTGTGTGCTCACCTGCGCAGCTACACTCAGAACAACACTGAATTTCGAGCTCTCATAGCGGAGCCTCGCATGGGCCGGATGGTTTCAGCTGTGATCCAGGAGGACAACTATGAAGTCAGTTTGAGGATCAACTTTGTCTCTGCCGGACTTGAAAAAACTAAGTCCTGTCAGGTAGACGGGACTGAGAAGCCCCTTATACTATCAGAGAACCAGAACCTCAGCAGTGTGACGGAAGGCATGAGCGGCCTATCAGCCAGACAGACCAGCCTGGCTGAGAAAGAGAGTGAGAACGCTACCTCAAAGTCTGCAGCTTCCAGGAGAACAGTGAAAAACCTCAGTCAGAGCTGGACCTCTGACGTTGCACAGAAACCGCCTCCATCCAAAGACAGTCTGCTTCTGAGGGAAGTTGGCCCAGACGGGAGGGGGGAGATCTCTGTGGTCCAGCAACTGCTTGATGAGGGTGCAGATCCCTCATGCCAGGGGTGCGCCGGGCACCCTGCCCTGGTTGTTGCTGTGCAGCACGAGCACCACGAGGTCCTCCCTGTGCTGGTACAAAGGGGAGCTGACGTCAACTGGCAGTCTGGGCCGGTGAACAACACTGCTCTGCATGAGGCTGCTGCTCTTGGGAGTAAGGGCTTACGGTGTGCAGAGACACTATTAGGATGCAACGCCAGCATTCGGAAGAAGAACGACAGAGGTCTGACGGCCTATGACTTGGCAGTCACTTCAGATTGCAGCCCCTTGGTGTCTCTACTAGCTGCTAAGATGGGTCAGGGCATGCTAGACAGACTGGTCAAACCCAGGACTCACCCAAACCTAGATGCATTCCGATGACAGAGAGAATTGTGTGCggcccccaaatggcaccctattccctatagtgcactgctatgggccctgctcaacagtagtgcactaaataggcaacaggttcccatttgggatgcaaaccttTTCTCCATGGTGGCCTTATTTTCTGAATTGACATTTCATCAATTATCTTGAATCTGTTAATCAATTATAATTTCCAGAAATGGGATTGATAAGGAATTTACCCCAACCTTATGTACTGTAGTGCTACAAACATCTACAACCGTTTGAGGAAAAACACCCATTTCTTGTAAATGGCTAATTTGTTAATACTAACAAAACATTCGATTTGAATACAGTTGCGCAATATAGTACTTGATGATAATAATAAATGGTACACATACTACTAGCTATAGTAACTAACACTAGTTCTAAGAGGCATGTACACTGAGGTCCAAAAGTATTGACAGTGacccattttttgttgttttggctctgtactccagcgctttgaaataaaacaataactgATGTTTAAGTGCAGACGGTCAGCTTTCATTTTAGGATATTTTCATCCATAGAAATTACATAACTTTTTGTAAATAGCCCCCCCAGTTTAAGgaaccaaaagtatttggacaaattcacttaatcagaaagtattcatacctgtTGACTcattccaaattttgttacactcggaatttaaaatatattacaTATTTTCCTCTTACCCATCTGTAAACAAACCtcataattacaaagtgaaaacatgtttttagaaattgttgcaaatgtattgaaaaataaACACAGAAGTATCTCATTTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651429 lncRNA upstream 21055 35217312 ~ 35217841 (+) True G1442640
TU1651380 lncRNA upstream 54356 35120694 ~ 35184540 (+) False LOC110493802
TU1651361 lncRNA upstream 135579 35102922 ~ 35103317 (+) True G1442579
TU1651355 lncRNA upstream 137725 35091349 ~ 35101171 (+) True G1442573
TU1651330 lncRNA upstream 185428 35053035 ~ 35053468 (+) True G1442548
TU1651682 lncRNA downstream 25433 35277886 ~ 35278161 (+) True G1442852
TU1651685 lncRNA downstream 27617 35280070 ~ 35280283 (+) True G1442855
TU1651903 lncRNA downstream 180301 35432754 ~ 35432986 (+) True G1443054
TU1651906 lncRNA downstream 184536 35436989 ~ 35437368 (+) True G1443057
TU1651924 lncRNA downstream 193137 35445590 ~ 35447094 (+) True G1443074
XM_021567438.2 mRNA upstream 6740 35228715 ~ 35232156 (+) False rbbp9
NM_001165246.1 mRNA upstream 6751 35228803 ~ 35232145 (+) True rbbp9
XM_021568298.2 mRNA upstream 55657 35139596 ~ 35183239 (+) False LOC110493802
XR_005036966.1 mRNA downstream 11742 35264195 ~ 35266310 (+) True LOC118940403
XM_036949791.1 mRNA downstream 27543 35279996 ~ 35311816 (+) False rrbp1b
XM_036949792.1 mRNA downstream 29372 35281825 ~ 35311816 (+) False rrbp1b
XM_021568310.2 mRNA downstream 29374 35281827 ~ 35311816 (+) False rrbp1b
XM_036949790.1 mRNA downstream 29375 35281828 ~ 35311816 (+) False rrbp1b
TU1651374 other upstream 54356 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 54356 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 936287 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 943567 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1262421 33976193 ~ 33976475 (+) True G1441315
TU1652084 other downstream 421511 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 494419 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 986491 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 1078782 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 1239924 36492377 ~ 36529730 (+) False LOC110493174

Expression Profile