RNA id: XM_021567460.2


Basic Information

Item Value
RNA id XM_021567460.2
length 1943
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110493172
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35368886 ~ 35392355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAGACGATCAGTAGCGTCAAGTTATTGGCACCTGAGCCAGAGAGCATTTCCATCAGCGACTCCACAGACACTGACGAGCCCCTTGAGGAGGCAACCGAGGAACACCAGCCGTTAATGGTGGATCCGTCAATTACGGCGCTTCAGTCAGTCGAAGGAGAATACAGTATGTCAGTGATCCTAGGCAGGAAATTGAAAAGGCTTGTGAGTTCAGGTGCACTTGCAAGTACAATGAAGGGAAGCCCTGGTGTTTGCTTTTTGTCCCCAAGGAGATGGTCAAGAGACCTGTCCAGATGTATTATCTCACTAATGGTACGGTGTCACCTGAGAGGGTGTGTAGTTATCAGGATGTTCTGGACCACCTGAACCTGACCAGAGGAAACGATGTGTTCACCTCCACGCGGCCCGTGCTCGACCACACACACCCAACCATGGTGCACCTGGATGTCTACCTGTACGCTATACTCGccgtgatTGAGAAGTCCCAGACCTTTGTTCCCTTCATCTGGATACAACTGaccTGGAATAATGAGCGGATCTGGTGGGATCCTAGTCAGTTCTGTGGAATATCCAGGGTCTCCGTTCCCAAAGAGATGTTGTGGATACCAGACCTCTTAATCTATGAGATGATAGAGAAGGATGATGGCCCTCACAGCCCATACCTGTATGTGTCCCATGATGGGATCGTCTTAATAGAGGACGAAATGAAGGTGGTCAGCACCTGTAAGATGGACGTCCACAAGTTCCCCTTTGACACACAGAGATGTAACATCACATTCAGCTCCGCCATACACATCGtgACAGATATACAGCTCATTCCTTTCTCTAACTCGTCCCGGGTCACCCAGGCTTCTCGTGAAGTCATGCAAACGCAGGGAGAGTGGGAGTTCCTGGACATGACTGTCTCCAGGGGCAAACTAATCTTAGATCGCGAGTGGGACCAGATCTCATACACTATCACCATGGCGAGGAGGCCCCTCCTCCACGTCATCAATTTCCTGCTTCCCATCCTGTTCTTTCTGTGTCTGGACCTGGCCTCCTTCCTGATCTCAGACCAGCGGGGGGAGAAACTAGGCTTTAAGGTCACCGTGCTGCTGGCCATCTCTGTTTTGCTGCTCATCCTCAATGACATACTGCCCTCCATGTCAAACAGGACCCCTCTCATAgCGACCTACTGTATAGTGATCTTTGCCTTCATGTTGCTAAGCCTGTTGGAGACCATCTTAGTGACTCACCTGATGGAGAGAGATTCCGTACACCAAGAGACAGGTATAGACCGCGCCCCCGCATATGACTGTGACAACAAACCAGACCACACCCCCTGTCACACCTGTGACTCAGaggaggagaggaggcgtgGTTGCTGTGCCTGTATCTGTGATGTGTCTGGAAGAAAAGCTCCATGTGAACCATTGCCTGTTGCAGAAGAGGTCATCTGTAGCGAGCAAGGAGAGTCTCGCCTGCTGCTGTTGATTCTGGGGGACCTACGGGCGGTTGAGCGGACATTAGCGTTGTTCGCCAGTGGCAGGAGGGAGGGGAAACCTGGCTATTGGACCAGAGTGGCACGGCGCCTCAACGCCGCCTTCTTCACCGTCTACCTCATCTCTGTCATGCTCTTCATTAGCCTTATGTGTAAGGAGTGGTTAAATTAGACCTAGAATTAAATTACCAATTGCATATCCAAATCTAGACATCAGAGCATGCCTGTATACTTTGTTTACCTCCCATTTTCTCACGTGCAGTGCCACTGTCGATGGGTGTATTGAAAGCCATGTGCATTTTTTTAGCTCATGTgcataaaatatacattttttttatatttaacatATTCGAACACTATGGAGAGTACTTATGTTATCCAACTGTGTGCTTTTCATTTCATATATCATGTTAAATTAAATTTAATAATTTTATTGTAGACTACGCTTTACACCAAATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1651685 lncRNA upstream 89594 35280070 ~ 35280283 (+) True G1442855
TU1651682 lncRNA upstream 91716 35277886 ~ 35278161 (+) True G1442852
TU1651634 lncRNA upstream 117642 35250051 ~ 35252235 (+) True dzank1
TU1651628 lncRNA upstream 130975 35238129 ~ 35238902 (+) False dzank1
TU1651429 lncRNA upstream 152036 35217312 ~ 35217841 (+) True G1442640
TU1651903 lncRNA downstream 40399 35432754 ~ 35432986 (+) True G1443054
TU1651906 lncRNA downstream 44634 35436989 ~ 35437368 (+) True G1443057
TU1651924 lncRNA downstream 53235 35445590 ~ 35447094 (+) True G1443074
TU1651951 lncRNA downstream 125411 35517766 ~ 35520282 (+) False G1443097
TU1651950 lncRNA downstream 127263 35519618 ~ 35520282 (+) True G1443097
XM_036949791.1 mRNA upstream 58061 35279996 ~ 35311816 (+) False rrbp1b
XM_021568316.2 mRNA downstream 263120 35655475 ~ 35677264 (+) False bdh2
XM_036949797.1 mRNA downstream 265178 35657533 ~ 35677264 (+) True bdh2
XM_021568317.2 mRNA downstream 297439 35689794 ~ 35708517 (+) True cfap58
XR_005036967.1 mRNA downstream 324447 35716802 ~ 35727758 (+) False aars2
XM_021568318.2 mRNA downstream 324447 35716802 ~ 35741595 (+) False aars2
TU1651374 other upstream 185337 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 185337 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1067268 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 1074548 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1393402 33976193 ~ 33976475 (+) True G1441315
TU1652084 other downstream 281609 35673964 ~ 35744642 (+) True G1443221
TU1652130 other downstream 354517 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 846589 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 938880 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 1100022 36492377 ~ 36529730 (+) False LOC110493174

Expression Profile