RNA id: XM_021568320.2


Basic Information

Item Value
RNA id XM_021568320.2
length 6140
RNA type mRNA
GC content 0.47
exon number 22
gene id aars2
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35716802 ~ 35741595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAGAAGAAGAGCTGCCAACATGGCGGCGCACATGAGACGCTTGACACATTGGTACAGAGCAGTGATAAACAATAATTTAACATCACTTTCAAGCGTCAGAGGATATTTATCAAGGTCATATTCTCAGGTTCAAACAGACTTTTCGTCTAATCGTGTGCGGCGTACGTTCACAGATTTTTTTCATGAACTCTACCAACACATAATTGTGCCATCCTCCCCTGTTCGTCCGCGGGGAGACCCGAGTCTCCTGTTTGTCAACGCAGGCATGAACCAGTTCAAGCCTATTTTCCTTGGAGCAGCAGACCCGCGCAGTGAAATGGCCACATACCGGCGGGTGGTGAATAGTCAGAAGTGTGTCCGGGCTGGGGGTAAACACAACGACCTGGAAGATGTTGGTCGAGATGTCTACCACCACACCTTCTTTGAGATGTTAGGAAACTGGTCCTTTGGCGATTACTTCAAGGAGGAAGCGTGCATCATGGCTTGGCGTCTACTCACAGAGGAGTACAGGATTCCTCCAGAACGCCTCTACGTCTCATACTTTGCCGGTGATGCCACCTCTGGTTTGCCAGCAGATGAGGAAACGCGCCACATCTGGCTAAGCTTGGGAGTGCCCTCTGATCACCtcctgccatttgggatgaaggacAACTTTTGGGAGATGGGGGAGATTGGCCCCTGTGGCCCCTGCACAGAGATCCACTATGACCACATTGGGGGCCGTAACGCAGCCTCGCTGGTCAATGCAGACAGTCCTGATGTGGTCGAGATTTGGAACCTGGTCTTCATGCAATACAACAGAGAGGCAGATCACAGCTTACGGTCACTCCCCCAGTTCAGCGTGGACACTGGCATGGGTCTGGAGCGACTGGTGACCGTTCTCCAAGGACAACGTTCCAACTACGACACTGACCTCTTTACCCCTCTGCTGTCTGCTATACAACAGCGCTCCAATTGCCCTGAGTATAGAGGGAGGACTGGAGAGGCGGATGTGGGCAAAGTGGACATGGCATACCGCGTTGTTGCTGACCACGTGcgcaccctgtctgtctgcattgCTGACGGAGTCTACCCGGGCATGTCTGGGGCCGAATTGGTTTTACGCCGTATCCTCCGGCGAGCTGTGAGGTTCAGCActgaggtactgcaggcccctgaGGGAGCGCTGGCAAGCCTGGTACCCACAGTTGCCCACATCCTGGGTGATGCTTATCCTGAACTGCATAAAGAGTCAGATAGGaTCATGGATATAATCAATGAAAACGAGGCCCAATTCCTGTCCTCTCTGAAGCAGGGGCGCAGAGTGATTGACAGGACACTCCAGAGATTGGAGAACAATGCCACTCTATTCCCAGTGCCTGTGGCCTGGTCTCTGCATCGTAACTTGGGCTTTCCTCTGGATCTCATTGGACTAATGCTGGAGGAGCAGGGCTTGAGTGTTGACCAACGGGCCCTTGATGTGTTGGCCATTGAAAATGAAAATCTTAGGTGTCAGGTGCAGACCTCTGTTGGGGATACGCTGGTCCATCTGGATCTGCACAGCCTAGCCCAGCTGCAGAGTGGAGAAGTTCCCCACACAGACGACTCTCCCAAGTACCACTACAGCTTGGCACAGGATGGCAAATATGTGTTCCAGCCCTGCCATGCTACCGTGCAGGCCCTGTACTGTGGACAGACTCTTGTCTCGGAGGTGGCCGGGGGCCagaggtgtggtgtggtgctTGACCGGACCTGTTTCTATGCAGAGCAAGGGGGGCAGTCCCATGACCAGGGCTACTTCATCAGAGATGGACTGCCGGATGTCCTGTACCCTGTTGAGGCTGTGCAGCTTGCTGGGGGATATGTGGTTCATCAGGTCACCGCTGCTGAAGTGCTGAGAAAAGGGGACCAGGTCCAGCTCTACCTGGATGAGCCACAGAGACTAGCCTGCATGGTCAAGCACACCGCCACACACGTCCTCAACTTCGCCCTCCGTCAGCTGCTGGGTTCTTCTGTGGAGCAAAGAGGCAGTCATGTCGCTGCAGACCGCCTACGCTTTGACTTCAGCGTCAAGGGATCATTGAGTATTCCCCAGCTCCAGGAGATTGAGAGGAGCATCCACAACATTATCACAGAGAATAATGCGGTGTACATGGAAGAGGTTCCCCTGGCCCGGGCTAAAGACATCCCAGGTCTAAGGACTGTGGATGAGGTGTACCCTGATCCGGTGAGAGTGGTGTCCGTGGCAGTTCCCGTAGCAGACCTGTACGATTCTCAGACGGACAGATGGACGTCAGTGGAACTCTGCTGTGGGACGCATTTACTGACAACCGGGGAGATCGGGGATTTGGTTATCATTTCCGAGAGGCAGATGGTTAAAGGGATCAGCCGTATCGTGGCAGTCACTGGAGACGACGCCAGAGAGGCTCGAGAGGCGGGTCAGGTCCTGACCCAGGAAGTGGAGTCTTTGTCAGCACGTCTTGCAACGGTCGCCAGCCCCTCCCTCGCAGATGCCAACCGGCTGGCCAAAGAAGTGGGCATACTGACAGATGCAGTGGATTGCACTGCTATACCACAGTGGAAGCGGAGGGAGCTTCAAACTCGCCTCAAAGGTCTACAGAGGACAACCAACACAAGCATAAGGAAACTGGAGACCAAAGAGGCTGCTGTGAAAGCCCAATCACTATTCATAAAGAATAGCAACAAGAATATTGTAGTGGACACTGTGGACACAGACTCTATATCAGTGCTGATGAAGACAGTGAACCAATACAGTGACAGAGCCCCAGGGACCCTGATCATGCTACTCTCCCACCAGCAGCCATCGGGGAAGGTCCTGTGTGCGTGCCAAGTGCCCAAGGGCTTTAGTGCTCTCTCTGCCAGTGACTGGGCCCTGACGGTGTCTGCTCGCCTGGGAGGGAACGCAGGTGGCTCTGCCACTGTGGCAAAGGGCACAGGGAGTGTGGCCAACCTCACTGAGGCACTCAGGTGTGCTGAAGAGTATGCACAGGACAAGACCCAAAACGGATGCTAAGTACAAACGTCAAGGGATCACAAGCCCACATTTACCATAGGGTGTAGGCAAAATACACCACTGTTCAATGGAAAAGTTCTCCAACTGCCACATGGCGGGTTGATGACAAAAGTACATATTACAGCATACTACAGGTTGGAAGAACCTACcattttcggggggggggggggggtgtgactgTGAGAAGTTCAGTTCGGGTGACTTTTAAAAGGACAGCCTATTGAAATGAAATGATACTGACATCTAAGATATAATTTCCCCTGTTGTAGCATAGTAGCTATAAATAAATAGACTGAGGGTTGCCCATCTGCATTCACCCCATTGGGCTAATCATTAGCGAGATCACAAACTCTAAACATTATCTTGTTGCTAGTTAGCAACATATTGATGATTTGAATGTCCCACTGGCACTCATCCAAGGATCATGTACTGTGAATACCACCTGCCCCATGGTACGTTTAGCCCTGGTCTTTCCTATGCATTCAACACCATTGGCGAGTGCCAACAGGCATAAACCATGCCATTGCTAAAAACTCTGGTTCTAAAATGGTGCAGTTCACAAATTTTGGGTATTTGAGAAATACGTTGAGTAAAATTAGAACGCTCTGTGATCCTCTTTTAACAGTGGCCATCAAAACTGATTTAAAATGTGTGTTTTCCAGCGATTACATTAAGAATGTTGTAGGCCACAATGACTTGGCATGCATGTTTTTCTCCATGTTGTTCTCCACTGCAATTTGAAAGCACTTTGAGAGGGATTTTCTTTTCTCTCATAGAATGCGACGGCCCAATTTAACCCCTGCTCCTATTTATTATGGATGCAAGTGTCTGGAATTTCTGTCAGGACTCAGTATGTACATGTGTATGATAAGCATTATGAATAGGTAGTCAAGACAGTGTTTGGAGATTTGTATTGTGCTTCTGTCCTAAGATTATGGAGAATAAGGAAAGTCTAGTTTGTCCTGCGATGTACTGAATGACAGCCTTGTAATAATTAACCATTTTTGAGTGTAAGGATTATGCATATTCCAGTTGTCTACTTTCTTTGTTTTAGAAGGAATAAAGACATTTGAGGTAATTTCTTATTGTACAATTTTCACTAATTATTCACTTGATAACCTTGAGTAACTCGAAGCTCACATTTTTACAATAGGTATAATTGTTTATTTAAATCGTTAAGGCATAATGGCAGTGTTATTGAATCCTAAATTGTTGTACAACagttacacttttttttttgtaattctCTTGTGCTGTAAAATGACATAGAAACCCATCTCTAAAACTCCACATACATTGAATTCATATACTAGATGGATATTCTCATGTGTAAAGcctgtgtctatgtatgctgatgactcaacataCACGTCAGTTACCATTGAAAGTGCAATCACTGCAACGctaaacaaagagttgcagtcagttCTAGAATGGGTGGCAAATAATAAGCTAgtactaaatatttcaaaaactgaaagtattgtatttgggacaaaccattcattaaaccctaaacctcaaccaaATATTTTAATGAATAATATGTAAAtagagcaagttgaggagactaaactgcttggtttAACCCTGGATTGATAacagtcatggtcaaaacatgttgatgcaACGGTAGCTAAGCTGGGGAACCCaagttctgtctgtaataaagtacTGTTCTGGTTTCTTGACATGGCTATCAACaaaacaagtcctacaggccctagttgtcGCTCCTGGAAAACTGCCCAGTCACatggtcaagtgccacaaagagggacataGGCAAGTTACTGTTGGCCCagagcagcacagctggccctaaATGTACACTGAGAGCTAACATCAATGACATCAAtcctcaaagtagaggagagattgactgcatcactacttgtcttttgtgagaagtattgacatgttgaaagcaccgaCCTGTTTGTTCAAATGCCTTGCATACAGCTCGGACAAACATGCATAACCCACAAGACATACCAcaaggggtctcttcacagtccccaagtacTGAACAGACTCTGGGAAacgcacagtactacacagagccatgaatACATTGAACTCTATTCTAGCCTTTCTCAAACCCCGGTCTGTGGACCAGCGTTGCTCCATGGAGGAATGCTTGCCGTTCCGTGGCATATTTGTCTTGAATATGATTGCTTTTTTGGGGGGATCCGCAGCATATTTGAATCTAATAAATCTTGCCATACTTGCCATAGGCCTACTTCACTGAGGTATAATAAGAACTGGAGACTGCGTCCAAGGTGTGTCGGCCTGTGGTTTTCAAGGTCATCTACTCATATTTGTATACACTGATTCATGGACCGTTTATATCTGGGTTGTATCCAGTTTATACGGACCAACATCACATGAGTACTAACACTCAGCGTGCACGGGGAGCAGCACGAGCAGCGACGACATCATCACATCATCCAAAAACATGGCAGACATTGGATGAATATAAACTGTTAATGTCTTCAGCTGTGAGTGATAAAAACAAAATCGTCCTCAACTTCaattatacactgaacaacaatataaagtcaacgtgtaacaatttcaatgattttactgagttacagttcatataagaaaatctgtCAAATTGAATTAAGTTTATGACCAATTGAATATGTAAACTATTCTACTATGGAGTTGTCTGATTTTGGTGTTGCTTTACTTGTGTTGTTGGCAGAGGAAAATTAAATGCGGACAACAATTTTTGATTAGATAATTCAGTATTTGCATAACCAAAGGTACCGGGTCACAGCTCGGCCTGGCTCTCATTTGGATCATCGGTACTGGGCCTCGGACCCAGCGTGATCCGGCCCAATTGAACCCCTGCTCCTATTTATTATGGATGCAAGTGTCTGAAATTTACATGTGTATGATGAGCATTATGAATAGGTAGTCAAGACAGTGTTTGGAGatgtgtattgttgtattgtgctTCTGTCCTAAGATTGTGGAGAATAAGGAAAGTCTAGTTTGTCCTGCGATGTACTGAATGCCAGCCTTGTAATAATTAACAATTTTTGAGTGTAAGGATTATGCATATTCCAGTTGTCTACTTTCTTTGTTTTAGAAGGAATAAAGACATTTGAGGT

Function

GO: NA

KEGG:

id description
K01872 AARS, alaS; alanyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1652059 lncRNA upstream 77358 35638494 ~ 35639444 (+) True G1443197
TU1652060 lncRNA upstream 80071 35633485 ~ 35636731 (+) True G1443198
TU1652049 lncRNA upstream 94347 35622015 ~ 35622455 (+) True G1443187
TU1652045 lncRNA upstream 100650 35615413 ~ 35616152 (+) True G1443183
TU1651950 lncRNA upstream 196520 35519618 ~ 35520282 (+) True G1443097
TU1652126 lncRNA downstream 215971 35957566 ~ 35957888 (+) True G1443247
TU1652226 lncRNA downstream 216660 35958255 ~ 35958545 (+) True G1443346
TU1652227 lncRNA downstream 217014 35958609 ~ 35958813 (+) True G1443347
TU1652229 lncRNA downstream 220616 35962211 ~ 35962441 (+) True G1443349
TU1652232 lncRNA downstream 227995 35969590 ~ 35969957 (+) True G1443352
XM_021568317.2 mRNA upstream 8285 35689794 ~ 35708517 (+) True cfap58
XM_021568316.2 mRNA upstream 39538 35655475 ~ 35677264 (+) False bdh2
XM_036949797.1 mRNA upstream 39538 35657533 ~ 35677264 (+) True bdh2
XM_036949795.1 mRNA upstream 324447 35368886 ~ 35392355 (+) False LOC110493172
NM_001124229.1 mRNA downstream 34901 35776496 ~ 35793723 (+) True LOC100135837
XM_021568323.2 mRNA downstream 52750 35794345 ~ 35824095 (+) False LOC110493821
XM_036949800.1 mRNA downstream 52750 35794345 ~ 35824095 (+) False LOC110493821
XM_036949801.1 mRNA downstream 52750 35794345 ~ 35824095 (+) False LOC110493821
XM_021568322.2 mRNA downstream 52752 35794347 ~ 35824095 (+) True LOC110493821
TU1651374 other upstream 532262 35168898 ~ 35184540 (+) False LOC110493802
TU1651377 other upstream 532262 35168898 ~ 35184540 (+) True LOC110493802
TU1650494 other upstream 1414193 34301487 ~ 34302609 (+) False LOC110493778
TU1650503 other upstream 1421473 34290041 ~ 34295329 (+) False LOC110493778
TU1649941 other upstream 1740327 33976193 ~ 33976475 (+) True G1441315
TU1652130 other downstream 5277 35746872 ~ 35751790 (+) True G1443251
TU1652322 other downstream 497349 36238944 ~ 36240725 (+) False LOC118940407
TU1652778 other downstream 589640 36331235 ~ 36375374 (+) True G1443844
TU1652966 other downstream 750782 36492377 ~ 36529730 (+) False LOC110493174
TU1652965 other downstream 801424 36543019 ~ 36557771 (+) True LOC110493174

Expression Profile