RNA id: TCONS_00047170


Basic Information

Item Value
RNA id TCONS_00047170
length 2264
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_023376
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 17124410 ~ 17126986 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTTTATTGTTTTGAGCAATGCTTATGGAATGGAGTGTATATCGTTTTACATCATAACACATGAGACAGCCTCCCCTTTGGTTACTCTCAAGATTTTAGACTCATTTCTGTGAGTGTGATGATGCAGCGCTTCCCCTTCACTCCTGTTACCTTCCCCATTTAGATAGAGTCACAGACGATGTGATTGTTCTTTATTTGTTTCGACACGCGTGTAAACCTGCATATCCAAAACACAACCCATCCGCTAGCGATATTCGTAAATGTTTAGAAAGTAAAAATCGAATTGCTAAAAAGTACATTACATTTTTCCCAAAGCTTACGCGATGAGTTATCCATCAGCGAACACATTGAGCAAAGAATGCTTTTGGCAAACGAAGAACAAAGTGGAGGGCTTTCTGAGAAGGCGTGAAGCTGTATCTGACTGTAGCACTTTTCACATTAAGTGAAATTCACATATATATCTCTGCGTGTGGATCCAGTATCAGAAGCTGAAGCGATGCTCTGACGACACTATCAAAGTCTTGATGCTAAAACAGCCTCTTTTGTCATGCCCAAGTTTatgagatttgttttttttttctgttgtgatTAATACAACCAAGAAGACCAGGGTTTGTTTTCTTCCCAATGAGAACAATAAAAAGGGTTATTTTTCCCCCACTGTGCAATGGCTTCCCAAGGGCACAAGCAGCGCTCAGTTTATTAAGAAAATGAAACACTAACCAAGGACGCCGTAACATTGGTGCCGTATAATACTTCCAGATAAAAATGCGTCGAGAAAGCCTGAACACAATTTACAATTAACACTATAACAAGAGCCACACCTACTCATATCAACAAATTCACAATGCACACTCTTGTCCAAAAGGCTTTGCACATAGAATTAGCCAGTCAAGGAGAAATTGTGACCATTTTCAGTGCTGCTGTGTTGTGAACAGAACGTGTAATGTCTTGTGTCCCGTTTGAAGCAACAGCATCAGAAGAAACATCAAAACatcagaggagaaaaaaaaacgaaaaaaaaaaaacactgaaaatatcaGGATTATTTTTTCAACCACCcctaaatattagaaaataacattttacttctgtttgaaaaaaaagattaaaaaatacagAATTAAATAATTTGGAGTAAAAAGGCACGACTCTTGCACAGTGTATACATTGAAAACACAGTATAAAGCAGGTATGGAAccatcttaaaaaacaaaaatagaccTGGGGTTGGGGATTAGGGCAAGGGGCGGAAAAGCATGGAATATAGACCATCTCTGGACACGTCCAGACTGAATACTAAAATAATGCAACATgcatttttcctctttttcattTGTAGACAGTACTTGtgctgaatgaattaaaatagtaACATTCTTCATTTCTCAGAACACTTTGAGCGAATCACAGAGTGGTGCTTAATTAAAATTGAATGTAAAATATGTGCAAGTGACCAACAGAAACACGAGGCGTTTTCTCTCTTTCAATTAGAAAAGTTAAGAAACAAATGTTAATCTCTAAGTCATATTACCTGCTTCTAATTCAATGCCGTTTACAAAAGTATTCTCCTGTTACATGTATTAAATTTCCCTTGTAAATACCACTGCAGAACCAACAAACTCCGTGAACATTTTGGTTCCATTCATCATGTGCAAAATCAGTTCATCTTTTGCTGCCAATTTGAACGTTCAAAAGAACTGCGAACAAAAGACACACACAAATTCAAACACAACCAATGttttaaaaagacagaaaaaaaaatacacaaagcaCCCCTTCCCCAAACCTCAATGGAATACTGAAACACAACTAAACGGTGTGTCCTGGTACGATGCGAGAGGTAAACTATGTTTTGTCTGCTGAGAACAAGCGTATGCGCGAGAACACGTGAAATGGCAAGGCTGCGTTGAACAGTGCCTCATAGTGCTATCGTTGCAGCTCGTAACAGACCGAGTGATCCTAAGAAAAAGTGCAACAGTTTAAGGTGCTGATGGCAACTGAATCACTAATGTAACAGAATTCACTGATGACCAAAGCAAAAGCACTGATCGATCCTGCTGCCTCAGTGTCTTCATTCTCCCTCCTGTCAAGTTGCTGcagaaccaaacaaacaaacaaaaataataaacacaaaaaaactaaatacctaCCAGAACCTTCGCCTCAGAACACTGAAGGAACATGCATAACAGATTCATGTCTGTCCACACAAGGCAAGAAAAATATCAAAttggaacaaacaaaaaaatgagaaTAAGG

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0043069 negative regulation of programmed cell death biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060548 negative regulation of cell death biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046850 lncRNA downstream 901624 16204788 ~ 16222786 (-) True XLOC_023367
TCONS_00047169 lncRNA downstream 976892 16146503 ~ 16147518 (-) True XLOC_023366
TCONS_00046849 lncRNA downstream 1374996 15745070 ~ 15749414 (-) True XLOC_023364
TCONS_00047168 lncRNA downstream 2092056 15005512 ~ 15032354 (-) True XLOC_023360
TCONS_00047167 lncRNA downstream 2679274 14441954 ~ 14445136 (-) True XLOC_023356
TCONS_00047171 lncRNA upstream 106540 17233526 ~ 17236200 (-) True XLOC_023378
TCONS_00046227 lncRNA upstream 239323 17366309 ~ 17368570 (-) True XLOC_023379
TCONS_00047172 lncRNA upstream 276484 17403470 ~ 17406396 (-) False XLOC_023380
TCONS_00046228 lncRNA upstream 276484 17403470 ~ 17406483 (-) True XLOC_023380
TCONS_00046230 lncRNA upstream 282322 17409308 ~ 17413929 (-) False XLOC_023381
TCONS_00046222 mRNA downstream 57126 17048078 ~ 17067284 (-) True XLOC_023375
TCONS_00046220 mRNA downstream 75140 17040211 ~ 17049270 (-) False XLOC_023375
TCONS_00046221 mRNA downstream 76492 17041823 ~ 17047918 (-) False XLOC_023375
TCONS_00046219 mRNA downstream 84772 17031129 ~ 17039638 (-) True XLOC_023374
TCONS_00046218 mRNA downstream 95036 17027310 ~ 17029374 (-) True XLOC_023373
TCONS_00046224 mRNA upstream 237759 17364745 ~ 17400143 (-) False XLOC_023379
TCONS_00046225 mRNA upstream 238116 17365102 ~ 17389263 (-) False XLOC_023379
TCONS_00046226 mRNA upstream 238116 17365102 ~ 17400472 (-) False XLOC_023379
TCONS_00046232 mRNA upstream 290164 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046231 mRNA upstream 290164 17417150 ~ 17892385 (-) False XLOC_023382
TCONS_00046216 other downstream 144682 16971104 ~ 16979728 (-) True XLOC_023371
TCONS_00046210 other downstream 224286 16896808 ~ 16900124 (-) False XLOC_023369
TCONS_00046204 other downstream 569427 16554869 ~ 16554983 (-) True XLOC_023368
TCONS_00046203 other downstream 1049295 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046200 other downstream 1910425 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046223 other upstream 9763 17136749 ~ 17139114 (-) True XLOC_023377
TCONS_00046236 other upstream 419767 17546753 ~ 17546869 (-) True XLOC_023383
TCONS_00046242 other upstream 1326186 18453172 ~ 18456584 (-) False XLOC_023386
TCONS_00046245 other upstream 1343180 18470166 ~ 18485491 (-) False XLOC_023387
TCONS_00046247 other upstream 1346795 18473781 ~ 18485411 (-) True XLOC_023387

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU392561 True 237 lncRNA 0.53 1 NC_048568.1 35503970 ~ 35504206 (+)
striped catfish (Pangasianodon hypophthalmus) TU392561 True 2913 lncRNA 0.38 2 NC_047616.1 13287447 ~ 13290399 (+)